Pairwise Alignments

Query, 248 a.a., ABC transporter substrate-binding protein from Methanococcus maripaludis S2

Subject, 254 a.a., ABC transporter substrate-binding protein from Methanococcus maripaludis JJ

 Score =  150 bits (379), Expect = 2e-41
 Identities = 88/247 (35%), Positives = 139/247 (56%), Gaps = 5/247 (2%)

Query: 4   ICFLMAIVLILAISACIS-LPSEQITIKTGTLSVGVFKHAPPAVYGQNGELIGFEVELVS 62
           +  + +++++ + S CIS    E  T+  G L+VG+    PP  Y + GEL GF+++L+ 
Sbjct: 7   LVIISSVLILTSFSGCISSYGKEYNTVTPGVLTVGITPEMPPQQYYEEGELKGFDIDLMK 66

Query: 63  EIAKRMNLNVEFKEYMFSNLLNAVANNEIDCAISDISISPEREKIVSFTRAYSHTELVVL 122
           EIA  M L  EFK Y +     A+ N EIDC +  ++ISPER++ + F+RAY  T +VV 
Sbjct: 67  EIANNMGLKPEFKIYEYGGAHEALLNGEIDC-LPSMTISPERKEDMDFSRAYIQTYVVVA 125

Query: 123 VRKESGIRTITDLNGKKIGVVDDTIHETKAKSLQKSMDFEIIEYETPIELYNDLNNGKID 182
           V + S  R + DLNGK I VV +T  E  AK    S++  I  Y++   L +D+ +  ID
Sbjct: 126 VFENSPYRELKDLNGKNIAVVTNTYTEDWAKDYLGSINANIKSYDSIQGLVSDIYSKNID 185

Query: 183 ATIS---EMDNFKVSSYMDQLELIDTLEILYSGIAVNKNNKELLHEMDRVLLELETEGYI 239
           A ++   ++D +      +   + + + I Y  IAV K+N +L +E++  L ELE    +
Sbjct: 186 AVVTDQIQLDYYSKQKSFESRLIFEKMTIEYWAIAVKKDNHDLQNEINDALFELEENEAL 245

Query: 240 EELKQKW 246
            ELK KW
Sbjct: 246 YELKNKW 252