Pairwise Alignments

Query, 337 a.a., site-2 protease family protein from Methanococcus maripaludis S2

Subject, 403 a.a., hypothetical protein from Synechococcus elongatus PCC 7942

 Score =  116 bits (291), Expect = 8e-31
 Identities = 97/363 (26%), Positives = 164/363 (45%), Gaps = 40/363 (11%)

Query: 4   FKIARVMGIPIELHIT-FILLLIVVFYF----------------WGIEGLILYMFLFTSV 46
           ++I  ++GIP+ +  + F+++ +V F +                WG   L++ + LF SV
Sbjct: 5   WRIGSILGIPLRIDPSWFVIVALVTFSYSETFRSQQPTWSPGLLWGA-ALVMALLLFASV 63

Query: 47  VLHELGHSYVAKKYGVKIEKILLLPIGGMAMMSEISKE--GEFKIAIAGPLVSLALGTVL 104
           + HELGHS +A+  G+++  I L   GG+A +   S+   G F +AIAGPLVS AL  +L
Sbjct: 64  LAHELGHSLIARAQGIRVSSITLFLFGGVAAIERESRTPGGAFWVAIAGPLVSFALALLL 123

Query: 105 LGISTVTDYTLAEYPLFQTVGGLNILLGIFNLLPAFPMDGGRVFRALLSKLTSMSYIKAT 164
           L              L   +G LN +L +FNL+P  P+DGG+V +A+  K+T   Y +A 
Sbjct: 124 LISQLWWPAGSPAQVLSLNLGRLNFILAVFNLIPGLPLDGGQVLKAIAWKVTGDRY-RAV 182

Query: 165 KLASTVGQYFALALLIFGLINF--------NVILVLIAIFIYFGASQEYRALVADTLFQD 216
             A+  G+  +   +  GL ++         V L L+  F +  A+   R          
Sbjct: 183 HWAANSGRILSAIAMAIGLFSWFLGPGGFSGVWLALLGWFGWRNATAYDRTTTLQQAILA 242

Query: 217 VPAKDIMSKNIVYVNSEDTVDDVLNLML--ENRFLGYPVLENGNIIGTITMNEISSTTAK 274
           + A + MS+    +    T+     L++  E     Y V  +G   G I++  +  T   
Sbjct: 243 IGASEAMSRRYRVLEGSLTLRQFAELLITEEQEGFAYFVASDGRYRGRISLATLRQTERS 302

Query: 275 ---TAKVKEIMSP--PVMVSPEAA-LNELIKGMANTDRVYV---VDNGNILGIISKTDIV 325
                 + ++  P   +   PE A L + I  +      YV     +G + GII   D++
Sbjct: 303 QWDRLTLTDLAEPFDRLPALPETANLAQAIAALQTAQPSYVTVLTPSGAVAGIIDHADVI 362

Query: 326 RTL 328
           + L
Sbjct: 363 QAL 365