Pairwise Alignments

Query, 187 a.a., DNA-directed RNA polymerase from Methanococcus maripaludis S2

Subject, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

 Score = 49.7 bits (117), Expect = 1e-10
 Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 25/107 (23%)

Query: 71  EFNVLTYVPELQEVVD--------GEIVDVVEFGAFVRLGP-LDGLIHISQIMDDFVSFD 121
           EF   T+   + EV D        G + +V  FGAFV +G   DGL+HIS + D F+S D
Sbjct: 632 EFKTATFAEGIHEVSDLEVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFIS-D 690

Query: 122 PKREAIIGKETGKVLEKGDKVRARIVAVSLREEKKRGSKIALTMRQN 168
           P+          +V++ GD V+ +++ V ++ +     +IAL+MR N
Sbjct: 691 PR----------EVVKAGDIVKVKVMEVDVQRK-----RIALSMRLN 722