Pairwise Alignments

Query, 187 a.a., DNA-directed RNA polymerase from Methanococcus maripaludis S2

Subject, 778 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

 Score = 46.2 bits (108), Expect = 1e-09
 Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 19/103 (18%)

Query: 65  AAYHETEFNVLTYVPELQEVVDGEIVDVVEFGAFVRLGP-LDGLIHISQIMDDFVSFDPK 123
           A + E    V    PE+  +++G + +V  FGAFV +G   DGL+HIS + D FVS DP 
Sbjct: 638 AHFKEGVTEVRDLKPEM--ILEGVVTNVTNFGAFVDVGVHQDGLVHISSLSDKFVS-DPH 694

Query: 124 REAIIGKETGKVLEKGDKVRARIVAVSLREEKKRGSKIALTMR 166
                      V++ GD V+ +++ V +  E+KR   I L+MR
Sbjct: 695 ----------TVVKAGDVVKVKVMEVDV--ERKR---IGLSMR 722