Pairwise Alignments

Query, 187 a.a., DNA-directed RNA polymerase from Methanococcus maripaludis S2

Subject, 573 a.a., Ribosomal protein S1 (NCBI) from Rhodospirillum rubrum S1H

 Score = 45.4 bits (106), Expect = 2e-09
 Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 16/86 (18%)

Query: 85  VDGEIVDVVEFGAFVRL-GPLDGLIHISQIMDDFVSFDPKREAIIGKETGKVLEKGDKVR 143
           V+GEI ++ EFG F+ L G +DG+IH+S +       D  R    G E  K  +KGD V+
Sbjct: 377 VEGEIKNITEFGLFIGLTGDIDGMIHLSDL-------DWNRS---GDEAVKDYKKGDVVQ 426

Query: 144 ARIVAVSLREEKKRGSKIALTMRQNG 169
           A+++ V + +E     +I+L ++Q G
Sbjct: 427 AKVLDVDVEKE-----RISLGVKQLG 447



 Score = 39.3 bits (90), Expect = 1e-07
 Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 8/82 (9%)

Query: 40  KDIGFILSIVDVDNV-----SDGSIIYGDGAAYHETEFNVLTYVPELQ---EVVDGEIVD 91
           +DIG +L    V  +     + G+I+    A   ET     + + E     E+++G + +
Sbjct: 152 RDIGPLLGQPQVFQILKMDRARGNIVVSRRAVLEETRAEERSKLMETLREGEILEGVVKN 211

Query: 92  VVEFGAFVRLGPLDGLIHISQI 113
           + ++GAFV LG +DGL+H++ I
Sbjct: 212 ITDYGAFVDLGGVDGLLHVTDI 233