Pairwise Alignments

Query, 187 a.a., DNA-directed RNA polymerase from Methanococcus maripaludis S2

Subject, 788 a.a., S1 domain-containing protein from Phaeobacter inhibens DSM 17395

 Score = 47.0 bits (110), Expect = 9e-10
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 17/87 (19%)

Query: 84  VVDGEIVDVVEFGAFVRLGP-LDGLIHISQIMDDFVSFDPKREAIIGKETGKVLEKGDKV 142
           V++G + +V  FGAFV +G   DGL+H+SQ+ D FV           K+  +V++ G  V
Sbjct: 651 VLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFV-----------KDPHEVVKTGQVV 699

Query: 143 RARIVAVSLREEKKRGSKIALTMRQNG 169
           +  +  V +  +     +IALTM+++G
Sbjct: 700 KVTVTEVDVPRK-----RIALTMKKDG 721