Pairwise Alignments

Query, 187 a.a., DNA-directed RNA polymerase from Methanococcus maripaludis S2

Subject, 787 a.a., RNA-binding S1 domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score = 47.8 bits (112), Expect = 5e-10
 Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 17/88 (19%)

Query: 80  ELQEVVDGEIVDVVEFGAFVRLGP-LDGLIHISQIMDDFVSFDPKREAIIGKETGKVLEK 138
           +++ +++G + +V  FGAFV +G   DGL+HIS + D FVS DP            V++ 
Sbjct: 650 KVEMILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFVS-DPH----------TVVKA 698

Query: 139 GDKVRARIVAVSLREEKKRGSKIALTMR 166
           GD V+ +++ V    E+KR   I+LTMR
Sbjct: 699 GDVVKVKVMEVD--AERKR---ISLTMR 721