Pairwise Alignments

Query, 187 a.a., DNA-directed RNA polymerase from Methanococcus maripaludis S2

Subject, 784 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 43.5 bits (101), Expect = 9e-09
 Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 19/89 (21%)

Query: 79  PELQEVVDGEIVDVVEFGAFVRLGP-LDGLIHISQIMDDFVSFDPKREAIIGKETGKVLE 137
           PE+  +++G + +V  FGAFV +G   DGL+HIS + D F++ DP            V++
Sbjct: 651 PEM--ILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFIT-DPH----------TVVK 697

Query: 138 KGDKVRARIVAVSLREEKKRGSKIALTMR 166
            GD V+ +++ V +  E++R   I L+MR
Sbjct: 698 AGDVVKVKVMEVDV--ERRR---IGLSMR 721