Pairwise Alignments

Query, 187 a.a., DNA-directed RNA polymerase from Methanococcus maripaludis S2

Subject, 776 a.a., transcription accessory protein from Klebsiella michiganensis M5al

 Score = 44.7 bits (104), Expect = 4e-09
 Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 17/84 (20%)

Query: 84  VVDGEIVDVVEFGAFVRLGP-LDGLIHISQIMDDFVSFDPKREAIIGKETGKVLEKGDKV 142
           +++G + +V  FGAFV +G   DGL+HIS + + FV  DP            V++ GD V
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVE-DPH----------TVVKAGDIV 701

Query: 143 RARIVAVSLREEKKRGSKIALTMR 166
           + +++ V L  +     +IALTMR
Sbjct: 702 KVKVMEVDLPRK-----RIALTMR 720