Pairwise Alignments

Query, 304 a.a., dihydroorotate dehydrogenase from Methanococcus maripaludis S2

Subject, 341 a.a., dihydroorotate dehydrogenase 2 (RefSeq) from Shewanella loihica PV-4

 Score =  103 bits (258), Expect = 4e-27
 Identities = 85/305 (27%), Positives = 149/305 (48%), Gaps = 40/305 (13%)

Query: 9   IEFKNPVFLAAGVMGETGSALKRMAKNGAGAVCTKSVGIEKKPGHNNPTMVEVEGG--FL 66
           + F NPV LAAG M + G  +      G G V   +V    +PG++ P +  ++     +
Sbjct: 52  LTFPNPVGLAAG-MDKDGECIDAFHAMGFGHVEVGTVTPRPQPGNDQPRLFRLKPAKAII 110

Query: 67  NAMGLPNPGADEYAGEIERIKDEMKRMNVKIIGSIYGKNDS--------EFQKAAEIIGN 118
           N MG  N G D     ++  K         ++G   GKN          ++    E +  
Sbjct: 111 NRMGFNNKGVDNLVANLKAAKSGA------MVGVNIGKNKDTPVEQGKEDYLICMEKVYP 164

Query: 119 YVDVLELNISCPHAGG----GYGSSIGQDPYLCKNVVSAVKDVSD-----IPVIAKLTPN 169
           Y   + +NIS P+  G     YG  +     L  ++ +  KD+++     +P+  K+ P+
Sbjct: 165 YAAYIAVNISSPNTPGLRSLQYGDLLDD---LLGSLKAKQKDLAERHGKYVPIALKIAPD 221

Query: 170 VT--DIKEIANAVVNAGADGIVAINTLGPGMVIDIESGVPILGNRVGGMSGKAVKPIAVK 227
           +   +I++IA +++    DG +A NT    +  D  SG+ +  N  GG+SGK +  ++ K
Sbjct: 222 LEPDEIEKIAESLIRNEFDGAIATNTT---LTRDGVSGL-VNSNEAGGLSGKPLNSLSTK 277

Query: 228 NVYDI--CSAVDVPVIGVGGITTGADAIEFMMAGASAVQVGTGVYYRGYDIFQKINNEIE 285
            +  +  C    VP+IGVGGI + ADA++ + AGA+ VQ+ +G  YRG ++ ++I   ++
Sbjct: 278 VIKQLADCLKGQVPIIGVGGINSAADALDKLDAGATMVQIYSGFIYRGPELIKEI---VD 334

Query: 286 EYLLK 290
            Y +K
Sbjct: 335 AYRVK 339