Pairwise Alignments

Query, 315 a.a., replication factor C small subunit from Methanococcus maripaludis S2

Subject, 652 a.a., DNA polymerase III, tau subunit from Synechococcus elongatus PCC 7942

 Score = 99.0 bits (245), Expect = 3e-25
 Identities = 74/276 (26%), Positives = 138/276 (50%), Gaps = 25/276 (9%)

Query: 3   KPWVEKYRPETLSEVVGHHEIIKRLTNYV-EKKSMPHLLFSGSPGVGKTTAALALAKDLY 61
           +P   KYRP+  +++VG   I + L+  + +++  P  LF+G  G GKT++A  LAK L 
Sbjct: 4   EPLHHKYRPQCFADLVGQEAIARTLSQALAQQRIAPAYLFTGPRGTGKTSSARILAKSLN 63

Query: 62  GDTW------------------RENFL---ELNSSDERGIDVIRTKVKDFARTKPIGDAP 100
                                 R N L   E++++   G+D IR  ++  A+  P+    
Sbjct: 64  CQQSTVPTASPCGECEACRAIARGNALDVIEIDAASNTGVDNIRELIER-AQFAPV-QCR 121

Query: 101 FKVIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLK 160
           FKV  +DE   L++ A NAL +T+E+  D   F+L+   P +++P I SRC  F F  + 
Sbjct: 122 FKVYVIDECHMLSTAAFNALLKTLEEPPDRVVFVLATTDPQRVLPTIISRCQRFDFRRIP 181

Query: 161 TEDLVENLKDISEKENLNLEKGGIDAIIYVSEGDMRKAINVLQTAAAVSDEITEEIVYKV 220
            + + ++L+ I++KE++ +E   I  +  +++G +R A ++L     +   +T E V+ +
Sbjct: 182 LQAMTDHLQVIAQKESIEIEPTAIALVAQLAQGGLRDAESLLDQLGLLPPPVTPEAVWDL 241

Query: 221 ASKARPDEIKKMTQLALNGKFVEAREQLYNLMIDWG 256
                  ++ ++ + A+     EA   L   ++D G
Sbjct: 242 LGAVPERQLLQLLE-AIAANDPEALLTLIRQLLDRG 276