Pairwise Alignments

Query, 321 a.a., CBS domain-containing protein from Methanococcus maripaludis S2

Subject, 615 a.a., cyclic nucleotide-binding protein (RefSeq) from Shewanella loihica PV-4

 Score = 47.8 bits (112), Expect = 7e-10
 Identities = 31/119 (26%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 54  INDIMTKDLVILDEEESIDELGKLIKQYRHMGYPVFNSNKELVGIVTFDDLRTKKSSMSR 113
           ++ +M+K  + LD   S+ +  +L++  R     + + N++L GI+T  DLR +  + S 
Sbjct: 152 VSSLMSKQPLCLDINASVSDAARLMRDNRVSSVLIID-NQKLAGILTDRDLRNRVLAESL 210

Query: 114 LKKLKIKDIMTKKDEIVSISPYSSASEAQKIMVEYDIGRVLVVDDGKLKGIVTKGDIVR 172
              L +   MT      ++S  +   EA  +M +++I  + ++D+G   G++T  DI+R
Sbjct: 211 DGSLPVHQAMTVTP--TTLSANALVFEAMLLMSQHNIHHLPIMDEGHPIGVITSTDILR 267



 Score = 33.5 bits (75), Expect = 1e-05
 Identities = 16/53 (30%), Positives = 34/53 (64%), Gaps = 2/53 (3%)

Query: 118 KIKDIMTKKDEIVSISPYSSASEAQKIMVEYDIGRVLVVDDGKLKGIVTKGDI 170
           ++  +M+K+   + I+  +S S+A ++M +  +  VL++D+ KL GI+T  D+
Sbjct: 151 RVSSLMSKQPLCLDIN--ASVSDAARLMRDNRVSSVLIIDNQKLAGILTDRDL 201