Pairwise Alignments

Query, 503 a.a., sodium-dependent transporter from Methanococcus maripaludis S2

Subject, 469 a.a., Na+-dependent transporters of the SNF family from Pseudomonas stutzeri RCH2

 Score =  212 bits (540), Expect = 2e-59
 Identities = 139/460 (30%), Positives = 233/460 (50%), Gaps = 36/460 (7%)

Query: 2   AREQWASKMGFILAAVGSAVGLGNIWRFPYMAYENGGGAFLIPYFVALLFVGIMVMVLEL 61
           +R  W+S+  F LAA GSAVGLGNIW+FPY+  +NGGGAF++ Y   +L +GI +++ E+
Sbjct: 24  SRGLWSSRWVFFLAATGSAVGLGNIWKFPYVTGQNGGGAFVLVYLACILLIGIPLLMTEV 83

Query: 62  ALGHSTKGSAPLALRRL----GKNFEW--IGWLAIATAFIITTYYTAIIAWALVYLVKLF 115
            +G   + +   A+ RL    G +  W  +GWL   T F+I ++Y  +  WAL Y+    
Sbjct: 84  MIGRRGRANPDGAVARLAREAGASSRWRVVGWLGGLTGFLILSFYLVVAGWALAYV---- 139

Query: 116 MVGFPTDFGGFFFSDILALSSGH--GDLGGFNLPILVGLALIWGVNYIVVNSGVRKGLEK 173
               P  F G  F+ +   +SG   G L    L ++V   L+     ++V  GVR GLE+
Sbjct: 140 ----PATFSG-GFAGVSGEASGELFGALLADPLRLVVCATLVLAATMLIVGFGVRGGLER 194

Query: 174 ANEILMPVLFFLILALVVRSITLPGGLMGIEYYLTPNFAVLLTPKVWIDAFSQIFFTLSL 233
           +   LMP LF L+L LVV +         +++   P+F+ L    V I A    FFTLSL
Sbjct: 195 SLRFLMPGLFVLMLVLVVYAAIEGEFAQALQFLFVPDFSALTAQSVLI-ALGHAFFTLSL 253

Query: 234 GFGIMVAYSSYLPKKSDLTASAFTISLMNCGFSFLAGFAVFGTLGYMAMTQGVPISEVVT 293
           G G M+ Y SYLP+ + +  ++  ++L +   + LAG A+F  +    +  G        
Sbjct: 254 GCGAMMVYGSYLPEGTSIAKTSILVALADTAVALLAGLAIFPLVFGNGLEPGA------- 306

Query: 294 QSIGLAFVAFPQALSLMPGGIILAAIFFIALFVAGISSSVSLVESTASAVIDKFNLPRHK 353
              GL FV  P A   MP G ++  +FFI L +A ++S++SL E + + + ++F + R K
Sbjct: 307 -GPGLIFVTLPIAFGQMPLGQVVGGLFFIMLVIAALTSAISLSEPSIAWLTERFRISRTK 365

Query: 354 A--ASAVIATSFFASLIYATN-------AGLYWLDSVDHYINWFTIPLVAVLEIIVSIWI 404
           A   S ++        +++ N        G  + D++D+    + +PL  +  ++ + W+
Sbjct: 366 AVLGSGLVLWLLSLGSVFSFNHWADYQLFGKTFFDTLDYLTTNWLMPLGGLGTVLFTGWV 425

Query: 405 FKGSKLEKYIDNLSEYNLGSFWKFFAGIFSPLFLIYMILN 444
            +   + + I  +    L   W       +P+ ++ + LN
Sbjct: 426 LQRQVVSEAI-GIRNAGLFQAWWNLLRYGTPVAIVLVFLN 464