Pairwise Alignments

Query, 503 a.a., sodium-dependent transporter from Methanococcus maripaludis S2

Subject, 486 a.a., Na+-dependent transporters of the SNF family from Pseudomonas stutzeri RCH2

 Score =  206 bits (525), Expect = 1e-57
 Identities = 149/508 (29%), Positives = 254/508 (50%), Gaps = 55/508 (10%)

Query: 1   MAREQ----WASKMGFILAAVGSAVGLGNIWRFPYMAYENGGGAFLIPYFVALLFVGIMV 56
           M RE+    W S+ GFILAA GSAVGLGNIW+FPY+  E GGGAF++ Y + +L +G+ V
Sbjct: 1   MTREKPKNLWLSRWGFILAATGSAVGLGNIWKFPYITGEFGGGAFVLMYLLCILAIGVPV 60

Query: 57  MVLELALGHSTKGSAPLALRRLGKN------FEWIGWLAIATAFIITTYYTAIIAWALVY 110
           M+ E+A+G   +GS   A+ R+ +       ++ +G +A+   F+I  +Y  +  WA  Y
Sbjct: 61  MMCEIAIGRRGRGSPIDAIGRVVRENNGNPLWKAVGGMAMTAGFLILCFYVVVAGWAFAY 120

Query: 111 LVKLFMVGFPTD----FGGFFFSDILALSSGHGDLGGFNLPILVGLALIWGVNYIVVNSG 166
            VK+             GG F     A +S    LGG++L  LV L  +W     +V  G
Sbjct: 121 TVKMLDGSLAATSVEALGGVF----EAHNSNPWQLGGWSL--LVALLTLW-----IVAKG 169

Query: 167 VRKGLEKANEILMPVLFFLILALVVRSITLPGGLMGIEYYLTPNFAVLLTPKVWIDAFSQ 226
           V+KG+E A   +MP L  L+L LV  ++T  G   G  +  + + +  +T +  + A   
Sbjct: 170 VQKGIENAVRWMMPGLAVLLLILVGYAVTSGGFDQGFAFLFSFDTS-KITGEALLAALGH 228

Query: 227 IFFTLSLGFGIMVAYSSYLPKKSDLTASAFTISLMNCGFSFLAGFAVFGTLGYMAMTQGV 286
            FFTLSL  G ++ Y SY+P    +  + F +++ +   + LAG A+F  +    M    
Sbjct: 229 AFFTLSLASGAILTYGSYIPDDQSIARTTFMVAIADTCVALLAGLAIFPIIFANGMDP-- 286

Query: 287 PISEVVTQSIGLAFVAFPQALSLMPGGIILAAIFFIALFVAGISSSVSLVESTASAVIDK 346
                 T   GL F++ P A   MP G     +FF  + +A ++S++S++E+T + + +K
Sbjct: 287 ------TAGPGLIFMSLPLAFQQMPFGTAFGVLFFAMVSIAALTSAISMIEATVAYLNEK 340

Query: 347 FNLPRHKAA----SAVIATSFFASLIYA-----TNAGLYWLDSVDHYINWFTIPLVAVLE 397
             + R KAA    + ++  S  A L +      T  G  + D +D+  + + +PL  +  
Sbjct: 341 HGISRLKAAMGSGAVLLVISMLAMLSFNLMSGWTPMGKNFFDWLDYLTSRWMMPLGGIFT 400

Query: 398 IIVSIWIFKGSKLEKYIDNLSEYNLG-SFWKFFAGIFSPLFLIYMILNGAWTELTLGYEG 456
           ++++ +  +   +    D L+   LG + W F      P+ ++ + L+       LG+ G
Sbjct: 401 VLLAGYALRSEIMR---DELNLPPLGYALWLFMVRYVCPVLILMVFLH------ALGWLG 451

Query: 457 YAPI--FLLLSLGIPVFGLVVSLIMPMI 482
           + P+  +  ++  I    LV  L+ P +
Sbjct: 452 FDPLQRWYWIAGAIGALTLVGELLRPRV 479