Pairwise Alignments

Query, 503 a.a., sodium-dependent transporter from Methanococcus maripaludis S2

Subject, 478 a.a., Sodium:neurotransmitter symporter from Pseudomonas syringae pv. syringae B728a

 Score =  170 bits (430), Expect = 1e-46
 Identities = 110/371 (29%), Positives = 193/371 (52%), Gaps = 29/371 (7%)

Query: 6   WASKMGFILAAVGSAVGLGNIWRFPYMAYENGGGAFLIPYFVALLFVGIMVMVLELALGH 65
           WAS+  FILAA GSAVGLG+IW+FPYM    GGGAF++ +   +  +GI VM+ E  +G 
Sbjct: 23  WASRWVFILAATGSAVGLGSIWKFPYMVGAYGGGAFVLVFLACIALIGIPVMIAETLIGR 82

Query: 66  STKGSAPLALRRLGK------NFEWIGWLAIATAFIITTYYTAIIAWALVYLVKL---FM 116
            ++ S   AL+ L +       + W  +  + TA +I ++Y+ +  W+L Y++ +     
Sbjct: 83  RSRLSPANALKTLAQEAGHSPRWSWGAFAGMITALLILSFYSVVGGWSLDYIIDMGRGDF 142

Query: 117 VGFPTDFGGFFFSDILALSSGHGDLGGFNLPILVGLALIWGVNYIVVNSGVRKGLEKANE 176
            G   D  G +F  ++A              +++   +   ++ +V+  GV  GLEK+  
Sbjct: 143 QGVSPDQVGAYFGAVIA----------DPWRLILWHTIFMLLSAVVIGKGVEAGLEKSLR 192

Query: 177 ILMPVLFFLILALVVRSITLPGGLMGIEYYLTPNFAVLLTPKVWIDAFSQIFFTLSLGFG 236
           I+MP+LF L+LAL+  S+T    + G+ +    N   +L     + A    FF+LS+G G
Sbjct: 193 IMMPMLFLLMLALLGYSLTTGHFMEGVHFMFDFNPEKVLDG--LLPAMGHAFFSLSVGVG 250

Query: 237 IMVAYSSYLPKKSDLTASAFTISLMNCGFSFLAGFAVFGTLGYMAMTQGVPISEVVTQSI 296
            ++ Y +Y+ K + ++++   I++++   S LAG A+F     +    G+  SE      
Sbjct: 251 SIMVYGAYMTKGASISSTVVGIAMLDTFVSLLAGLALFP----IVFAAGLNPSE----GP 302

Query: 297 GLAFVAFPQALSLMPGGIILAAIFFIALFVAGISSSVSLVESTASAVIDKFNLPRHKAAS 356
           GL FV  P A   +  G ++  +FF+ + VA  SS++SL+E   + ++++  + R     
Sbjct: 303 GLMFVTLPYAFGNVAFGQLMGIVFFVLVAVAAWSSAISLLEPMVAYLVERTRIRRAWVTF 362

Query: 357 AVIATSFFASL 367
            +  T +F  L
Sbjct: 363 WLAFTCWFVGL 373