Pairwise Alignments

Query, 503 a.a., sodium-dependent transporter from Methanococcus maripaludis S2

Subject, 503 a.a., sodium:neurotransmitter symporter (RefSeq) from Shewanella loihica PV-4

 Score =  421 bits (1082), Expect = e-122
 Identities = 217/483 (44%), Positives = 309/483 (63%), Gaps = 9/483 (1%)

Query: 1   MAREQWASKMGFILAAVGSAVGLGNIWRFPYMAYENGGGAFLIPYFVALLFVGIMVMVLE 60
           M REQW S++GFILAAVGSA+GLGNIWRFPYMAY+NGGGAF IPY  A++  GI  M++E
Sbjct: 1   MKREQWNSRVGFILAAVGSAIGLGNIWRFPYMAYDNGGGAFFIPYLFAMITAGIPFMIME 60

Query: 61  LALGHSTKGSAPLALRRLGKNF----EWIGWLAIATAFIITTYYTAIIAWALVYLVKLFM 116
            +LGH  K ++P    +LG       EW+GW  +  A +I  YY AII W L YL   F 
Sbjct: 61  FSLGHKIKKTSPRIFAQLGHTLGFRLEWLGWFQVFIAAVIAVYYVAIIGWTLSYLGFSFS 120

Query: 117 VGFPTDFGGFFFSDILALSSGH-GDLGGFNLPILVGLALIWGVNYIVVNSGVRKGLEKAN 175
             +  +   FFF+  L L +     LG F + I + +++ W + ++ V +GV+ G+E+AN
Sbjct: 121 QAWGDNPNDFFFNHYLKLGNNSPSHLGEFQIGIAIAMSIAWLMTFMAVFTGVKGGIERAN 180

Query: 176 EILMPVLFFLILALVVRSITLPGGLMGIEYYLTPNFAVLLTPKVWIDAFSQIFFTLSLGF 235
           +I+MP+LF ++L L+ R + LPG L G+ Y   P+F+ LL  +VW  A+ QIFFTLS+GF
Sbjct: 181 KIMMPMLFIMVLVLIGRIMFLPGALSGLNYLFEPDFSRLLDAQVWSAAYGQIFFTLSVGF 240

Query: 236 GIMVAYSSYLPKKSDLTASAFTISLMNCGFSFLAGFAVFGTLGYMAMTQGVPISEVVTQS 295
            IM+AYSSYLP K+D+  +AF   L+NCGFS LAG  +FG LGYMA  Q  P++EVV+  
Sbjct: 241 AIMLAYSSYLPTKADINNNAFMTVLINCGFSILAGILIFGVLGYMAEEQMKPLTEVVSSG 300

Query: 296 IGLAFVAFPQALSLMPGGIILAAIFFIALFVAGISSSVSLVESTASAVIDKFNLPRHKAA 355
           IGLAFV  P A++LMP   IL  +FFIAL +AG+SS +S++E+  SAVIDKF++ R  AA
Sbjct: 301 IGLAFVTIPTAINLMPAPYILGPLFFIALVIAGLSSHISIIEAVTSAVIDKFHVRRKPAA 360

Query: 356 SAVIATSFFASLIYATNAGLYWLDSVDHYINWFTIPLVAVLEIIVSIWIFKGSKLEKYID 415
             V +  +  S+ +ATN GL  LD VD++IN   + L  +LE+++  W+ K + + ++ +
Sbjct: 361 VLVCSLGYLVSMAFATNGGLLLLDLVDYFINNIALLLSCLLELVIITWLLKVTVIHQHAN 420

Query: 416 NLSEYNLGSFWKFFAGIFSPLFLIYMILNGAWTELTLGYEGYAPIFLLLSLGIPVFGLVV 475
             SE+ +G ++       SP  L  ++    +  L  GY  Y PI   L LG   +GLV 
Sbjct: 421 ENSEFRVGGWFVVCLRFISPAILATILAKNLYNTLVNGYGDY-PIADQLFLG---WGLVG 476

Query: 476 SLI 478
           +++
Sbjct: 477 TML 479