Pairwise Alignments

Query, 503 a.a., sodium-dependent transporter from Methanococcus maripaludis S2

Subject, 454 a.a., sodium-dependent transporter, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  196 bits (498), Expect = 1e-54
 Identities = 134/437 (30%), Positives = 225/437 (51%), Gaps = 28/437 (6%)

Query: 6   WASKMGFILAAVGSAVGLGNIWRFPYMAYENGGGAFLIPYFVALLFVGIMVMVLELALGH 65
           ++S++GFI+AA GSAVG+GNIW FP  A  +GGGAFL+ Y V +  +GI +++ EL +G 
Sbjct: 12  FSSRLGFIMAAAGSAVGVGNIWGFPTQAATHGGGAFLLVYLVLIFILGIPMLMAELMIGR 71

Query: 66  STKGSAPLALRRLGKNF------EWIGWLAIATAFIITTYYTAIIAWALVYLVKLFMVGF 119
             + +   A+ +LG N       + IG ++I TA +I T+Y+ +  W + + +      F
Sbjct: 72  HGQTNPADAMGKLGCNSLTRSLGKTIGLISIVTAGLIYTFYSILSGWFVSFAIAPIATAF 131

Query: 120 PTDFGGFFFSDILALSSGHGDLGGFNLPILVGLALIWG-VNYIVVNSGVRKGLEKANEIL 178
            ++    +  D             F+L   +   LI+  + ++V+  GV++G+EK ++ L
Sbjct: 132 GSNDTAAWLMD-------------FSLSRNLVFTLIFSTLVFLVLLQGVQEGIEKWSKRL 178

Query: 179 MPVLFFLILALVVRSITLPGGLMGIEYYLTPNFAVLLTPKVWIDAFSQIFFTLSLGFGIM 238
           MP+L  +++A V    +L G   GI   LTPNFA  + P   I+A  Q FF+L++G G M
Sbjct: 179 MPLLLIMLIAGVAYIFSLNGASEGISALLTPNFAKAIAPDTLINALGQTFFSLTIGTGAM 238

Query: 239 VAYSSYLPKKSDLTASAFTISLMNCGFSFLAGFAVFGTLGYMAMTQGVPI---SEVVTQS 295
           + Y SYL +K ++      ++  + G +FLA F +   + Y+A   GV I      +  S
Sbjct: 239 MVYGSYLSQKENIAKLTVWVAFTDSGIAFLAAFLIIPAM-YVAQHNGVQIFSPEGKLIDS 297

Query: 296 IGLAFVAFPQALSLM--PGGIILAAIFFIALFVAGISSSVSLVESTASAVIDKFNLPRHK 353
             L F   P   S +     +I++ +FF+ L +AG++S++S+ E   S V+ K    R +
Sbjct: 298 DALVFTVLPALFSTLGDTANLIISVVFFMLLIIAGLTSAISIAEVPTSYVMQKCGFSRQR 357

Query: 354 AASAVIATSFFASLIYATNAGLYWLDSVDHYINWFTIPLVAVLEIIVSIWIFKGSKLEKY 413
           A   +       SL+ A      +  ++       T PLVA+   I   WI++ S+L K 
Sbjct: 358 ATLIIGLLLTALSLLLAVFFETLFSFTI-MLTTQMTQPLVALGIAIYLGWIWRQSQLLKA 416

Query: 414 IDNLSEYN-LGSFWKFF 429
           I      +  G FW+ +
Sbjct: 417 ISKQEGVDATGLFWRIW 433