Pairwise Alignments

Query, 731 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 521 a.a., Aerotaxis receptor Aer from Pseudomonas fluorescens FW300-N2E2

 Score =  132 bits (331), Expect = 6e-35
 Identities = 83/280 (29%), Positives = 147/280 (52%), Gaps = 8/280 (2%)

Query: 430 EITVLSDELEDVGEGLKRAKETSEQVTDAANQVATAAADQSAKLQDTSDELEKTAKAADM 489
           E+++LS E   +   L R ++T+E + D A Q  T A + S+ L+    E E+ A A + 
Sbjct: 229 EMSILSQEAR-LKTCLTRLQDTAEHLNDQARQSNTLAHNSSSGLERQRVETEQVATAVNQ 287

Query: 490 -------VYNDAEQSVDSAIEVKDNSETGVKKVENAIDTMQKITNVIDELGKSIQELGEE 542
                  V +  +++ D+  E    +  G        + +++++ V+ E G+++ +L ++
Sbjct: 288 MAATTQEVASHVQRTADATQEANRLTSRGRDIAGETREAIERLSVVVGETGQTVTQLAKD 347

Query: 543 SKKINEVTVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDI 602
           S +I  V  +IK +A+QT LLALNA+IEAARAG+ G+GFAVVA E++ LA+   +S   I
Sbjct: 348 SDEIGGVVDVIKGIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQRTSESTGQI 407

Query: 603 NRTINGINKKVETTIDLGLAGRDEVDRGVVAIDEVNSAFMKIKESVETSAKMIAQIKDNA 662
           +  I  + +     +    AG  + + GV  + E + A + I E+V     M  QI    
Sbjct: 408 HALIAKLQQTATNAVQTMDAGHRQAEEGVARVMEADEALVGISEAVAHITDMTTQIAAAT 467

Query: 663 KNASNNTQEALRNVQDIASISEEFAATAEELTASSEEQNR 702
           +  S+  +E  RN+ +I+ ++++ +  A      SEE  R
Sbjct: 468 EEQSSVAEEISRNISNISELADQTSGQAHSSALLSEELTR 507



 Score = 35.0 bits (79), Expect = 1e-05
 Identities = 40/239 (16%), Positives = 98/239 (41%), Gaps = 16/239 (6%)

Query: 377 LAKTLKEIFDIMDHLAEGDFSVRADENRHKNKLQKTINHAIENVSKMMENLKSEITVLSD 436
           +A T +E+   +   A+         +R ++   +T   AIE +S ++      +T L+ 
Sbjct: 288 MAATTQEVASHVQRTADATQEANRLTSRGRDIAGET-REAIERLSVVVGETGQTVTQLAK 346

Query: 437 ELEDVGEGLKRAKETSEQVTDAANQVATAAADQSAKLQD-------TSDEL----EKTAK 485
           + +++G       +  + + D  N +A  AA ++A+  +        +DE+    ++T++
Sbjct: 347 DSDEIG----GVVDVIKGIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQRTSE 402

Query: 486 AADMVYNDAEQSVDSAIEVKDNSETGVKKVENAIDTMQKITNVIDELGKSIQELGEESKK 545
           +   ++    +   +A       + G ++ E  +  + +    +  + +++  + + + +
Sbjct: 403 STGQIHALIAKLQQTATNAVQTMDAGHRQAEEGVARVMEADEALVGISEAVAHITDMTTQ 462

Query: 546 INEVTVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINR 604
           I   T     VAE+      N S  A +        A+++ E+   A      VE  NR
Sbjct: 463 IAAATEEQSSVAEEISRNISNISELADQTSGQAHSSALLSEELTRTANTQYSLVERFNR 521