Pairwise Alignments

Query, 731 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 521 a.a., chemotaxis protein from Pseudomonas fluorescens FW300-N2C3

 Score =  134 bits (336), Expect = 2e-35
 Identities = 87/293 (29%), Positives = 152/293 (51%), Gaps = 15/293 (5%)

Query: 430 EITVLSDELEDVGEGLKRAKETSEQVTDAANQVATAAADQSAKLQDTSDELEKTAKAADM 489
           E+++LS E   +   L R ++T+E + D A Q  T A D S+ L+    E E+ A A + 
Sbjct: 229 EMSILSQEAR-LKTCLTRLQDTAEHLNDQARQSNTLAHDSSSGLERQRVETEQVATAVNQ 287

Query: 490 -------VYNDAEQSVDSAIEVKDNSETGVKKVENAIDTMQKITNVIDELGKSIQELGEE 542
                  V +  +++ D+  E    +  G        + +++++ V+ E G ++ +L ++
Sbjct: 288 MAATTQEVASHVQRTADATQEANRLTSRGRDIAGETREAIERLSVVVGETGNTVTQLAKD 347

Query: 543 SKKINEVTVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDI 602
           S +I  V  +IK +A+QT LLALNA+IEAARAG+ G+GFAVVA E++ LA+   +S   I
Sbjct: 348 SDEIGGVVDVIKGIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQRTSESTGQI 407

Query: 603 NRTINGINKKVETTIDLGLAGRDEVDRGVVAIDEVNSAFMKIKESVETSAKMIAQIKDNA 662
           +  I  + +     +    AG  + + GV  + E + A + I E+V     M  QI    
Sbjct: 408 HALIAKLQQTATNAVQTMEAGHRQAEEGVARVMEADQALVGISEAVAHITDMTTQIAAAT 467

Query: 663 KNASNNTQEALRNVQDIASISEEFAATA-------EELTASSEEQNRAVEEID 708
           +  S+  +E  RN+ +I+ ++++ +  A       EELT ++  Q   VE  +
Sbjct: 468 EEQSSVAEEISRNISNISDLADQTSGQAHSSALLSEELTHTANSQYSLVERFN 520



 Score = 37.7 bits (86), Expect = 1e-06
 Identities = 47/278 (16%), Positives = 114/278 (41%), Gaps = 23/278 (8%)

Query: 345 TGDELEELANSFNKMAKDIKE--LHSMLDADKLS-----LAKTLKEIFDIMDHLAEGDFS 397
           T + L + A   N +A D         ++ ++++     +A T +E+   +   A+    
Sbjct: 249 TAEHLNDQARQSNTLAHDSSSGLERQRVETEQVATAVNQMAATTQEVASHVQRTADATQE 308

Query: 398 VRADENRHKNKLQKTINHAIENVSKMMENLKSEITVLSDELEDVGEGLKRAKETSEQVTD 457
                +R ++   +T   AIE +S ++    + +T L+ + +++G       +  + + D
Sbjct: 309 ANRLTSRGRDIAGET-REAIERLSVVVGETGNTVTQLAKDSDEIG----GVVDVIKGIAD 363

Query: 458 AANQVATAAADQSAKLQD-------TSDEL----EKTAKAADMVYNDAEQSVDSAIEVKD 506
             N +A  AA ++A+  +        +DE+    ++T+++   ++    +   +A     
Sbjct: 364 QTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQRTSESTGQIHALIAKLQQTATNAVQ 423

Query: 507 NSETGVKKVENAIDTMQKITNVIDELGKSIQELGEESKKINEVTVLIKDVAEQTGLLALN 566
             E G ++ E  +  + +    +  + +++  + + + +I   T     VAE+      N
Sbjct: 424 TMEAGHRQAEEGVARVMEADQALVGISEAVAHITDMTTQIAAATEEQSSVAEEISRNISN 483

Query: 567 ASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINR 604
            S  A +        A+++ E+   A      VE  NR
Sbjct: 484 ISDLADQTSGQAHSSALLSEELTHTANSQYSLVERFNR 521