Pairwise Alignments
Query, 731 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2
Subject, 640 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2
Score = 144 bits (362), Expect = 2e-38
Identities = 115/413 (27%), Positives = 183/413 (44%), Gaps = 71/413 (17%)
Query: 290 NNARNNTIIIALFGLLIAVVISLVSSRSITKPINQLEDGVHKFGSGDYDHTINVKTGDEL 349
++AR+ I+ L L++ V+ + + +R I P+ V + SGD T ++ DEL
Sbjct: 285 SDARSRLIVSTLLALVLGVLAAWLITRQIILPLRTTMADVERIASGDLSETAQIQRRDEL 344
Query: 350 EELANSFNKMAKDIKELHSMLDADKLSLAKTLKEIFDIMDHLAEGDFSVRADENRHKNKL 409
L +M ++EL I I D +++ S A+E
Sbjct: 345 GVLQRGIQQMGSTLREL-----------------IGGIRDGVSQ--ISAAAEE------- 378
Query: 410 QKTINHAIENVSKMMENLKSEITVLSDELEDVGEGLKRAKETSEQVTDAANQVATAAADQ 469
LS + G+ KE ++ QVATA +
Sbjct: 379 ------------------------LSAVTQQTSAGVNSQKEETD-------QVATAMHEM 407
Query: 470 SAKLQDTSDELEKTAKAADMVYNDAEQSVDSAIEVKDNSETGVKKVENAIDTMQKITNVI 529
SA +Q+ V +AEQ+ +A E + G + V + ++++ + +
Sbjct: 408 SATVQE--------------VARNAEQAALAATEADSEAREGDRVVTEVVTQIERMASAV 453
Query: 530 DELGKSIQELGEESKKINEVTVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIK 589
+++ L EES KI V +I+ VAEQT LLALNA+IEAARAG+AG+GFAVVA E++
Sbjct: 454 VRSTEAMTALQEESDKIGSVMNVIRAVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVR 513
Query: 590 SLAEEIKKSVEDINRTINGINKKVETTIDLGLAGRDEVDRGVVAIDEVNSAFMKIKESVE 649
LA+ +KS E+I + + + + RD D GV ++ I +V
Sbjct: 514 GLAQRTQKSTEEIEGLVAALQNGTQQVASIMHTSRDLTDSGVELARRAGASLGSITRTVS 573
Query: 650 TSAKMIAQIKDNAKNASNNTQEALRNVQDIASISEEFAATAEELTASSEEQNR 702
M QI A+ S +E R+V ++ +SE+ AA +EE ASS E R
Sbjct: 574 NIQAMNQQIAAAAEEQSAVAEEISRSVVNVRDVSEQTAAASEETAASSTELAR 626
Score = 40.0 bits (92), Expect = 4e-07
Identities = 69/340 (20%), Positives = 126/340 (37%), Gaps = 53/340 (15%)
Query: 407 NKLQKTINHAIENVSKMMENLKSEITVLSDELED----------VGEGLKRAKET----- 451
N + TI+ A + ++ + + + L D ED + E ++RA+
Sbjct: 131 NGARTTIDGAATRLGELTAGVTNHVLQLPDYEEDRFAQLLAISQIKEDVQRAQYLLRVYM 190
Query: 452 SEQVTDAANQVATAAADQSAKLQDTSDELEKTAKAADMVYNDAEQSVDSAIEVKDNSETG 511
+ DA + T A L + L+ + AA SAI+ + +
Sbjct: 191 AAPANDAVKAIYTQLDTAQATLGRHAGALDANSGAALQQIRTVLDEYRSAIQALETATQA 250
Query: 512 VKKVENAIDTMQK-ITNVIDELGK-SIQELGEESKKINEVTVLIKDVAEQTGLLAL---- 565
+ K + QK I + D L + + L ES ++ +A G+LA
Sbjct: 251 IAKARQEMTDQQKEIVRISDSLYQFQLDRLDVESSDARSRLIVSTLLALVLGVLAAWLIT 310
Query: 566 ----------NASIEAARAGDAGKGFAVVA-SEIKSLAEEIKKSVEDINRTINGINKKVE 614
A +E +GD + + E+ L I++ + I GI
Sbjct: 311 RQIILPLRTTMADVERIASGDLSETAQIQRRDELGVLQRGIQQMGSTLRELIGGI----- 365
Query: 615 TTIDLGLAGRDEVDRGVVAIDEVNSAFMKIKESVETSAKMIAQIKDNAKNASNNTQEALR 674
RD V + A +E+++ + +TSA + +Q K+ + E
Sbjct: 366 ---------RDGVSQISAAAEELSAV------TQQTSAGVNSQ-KEETDQVATAMHEMSA 409
Query: 675 NVQDIASISEEFAATAEELTASSEEQNRAVEEIDASAEKM 714
VQ++A +E+ A A E + + E +R V E+ E+M
Sbjct: 410 TVQEVARNAEQAALAATEADSEAREGDRVVTEVVTQIERM 449
Score = 28.9 bits (63), Expect = 8e-04
Identities = 56/306 (18%), Positives = 119/306 (38%), Gaps = 39/306 (12%)
Query: 447 RAKETSEQVTDAANQVATAAADQSAKLQDTSDELEKTAKAADM--VY-----NDAEQSVD 499
R E + VT+ Q+ D+ A+L S E +A + VY NDA +++
Sbjct: 143 RLGELTAGVTNHVLQLPDYEEDRFAQLLAISQIKEDVQRAQYLLRVYMAAPANDAVKAIY 202
Query: 500 SAIEVKDNSETGVKKVENAIDT-----MQKITNVIDELGKSIQELGEESKKINEVTVLIK 554
+ + D ++ + + A+D +Q+I V+DE +IQ L ++ I + +
Sbjct: 203 TQL---DTAQATLGRHAGALDANSGAALQQIRTVLDEYRSAIQALETATQAIAKARQEMT 259
Query: 555 DVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTING------ 608
D + E R D+ F + +++S + V + + G
Sbjct: 260 DQQK-----------EIVRISDSLYQFQLDRLDVESSDARSRLIVSTLLALVLGVLAAWL 308
Query: 609 INKKVETTIDLGLAGRDEVDRG-------VVAIDEVNSAFMKIKESVETSAKMIAQIKDN 661
I +++ + +A + + G + DE+ I++ T ++I I+D
Sbjct: 309 ITRQIILPLRTTMADVERIASGDLSETAQIQRRDELGVLQRGIQQMGSTLRELIGGIRDG 368
Query: 662 AKNASNNTQEALRNVQDIASISEEFAATAEELTASSEEQNRAVEEIDASAEKMMEISRKL 721
S +E Q ++ +++ + E + V+E+ +AE+ + +
Sbjct: 369 VSQISAAAEELSAVTQQTSAGVNSQKEETDQVATAMHEMSATVQEVARNAEQAALAATEA 428
Query: 722 AEDADE 727
+A E
Sbjct: 429 DSEARE 434