Pairwise Alignments

Query, 731 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 650 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  126 bits (316), Expect = 4e-33
 Identities = 79/290 (27%), Positives = 143/290 (49%)

Query: 418 ENVSKMMENLKSEITVLSDELEDVGEGLKRAKETSEQVTDAANQVATAAADQSAKLQDTS 477
           + V ++   +      L + +  +G G+ +    ++Q++    Q +     Q  + +  +
Sbjct: 352 DEVGQLQNAMHGMTQSLRNLIGRIGGGVSQIAAAADQLSAVTAQTSAGVQTQRVETEQVA 411

Query: 478 DELEKTAKAADMVYNDAEQSVDSAIEVKDNSETGVKKVENAIDTMQKITNVIDELGKSIQ 537
             + + A     V  +AEQ+  +A +    +  G + V++A+  +  + + +D+   +I+
Sbjct: 412 TAMHEMAATVQEVARNAEQASIAARQADQQARQGDRVVQDAVGQIGNLASEVDQSAHAIE 471

Query: 538 ELGEESKKINEVTVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKK 597
            L  ES +I  V  +I+ VAEQT LLALNA+IEAARAG+ G+GFAVVA E+++LA     
Sbjct: 472 ALHAESGRIGSVLEVIRAVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALARRTHD 531

Query: 598 SVEDINRTINGINKKVETTIDLGLAGRDEVDRGVVAIDEVNSAFMKIKESVETSAKMIAQ 657
           S E+I   I  + +  +  ++   + R    R V   +E   A  +I ESV T  +M  Q
Sbjct: 532 STEEIEGLIANLQRVAQQAVEQMQSSRSLTQRTVDLANEAGVALGRITESVSTIEQMNQQ 591

Query: 658 IKDNAKNASNNTQEALRNVQDIASISEEFAATAEELTASSEEQNRAVEEI 707
           I   A+  S   +    +V  +  I ++ A+  E+   +S E  R   E+
Sbjct: 592 IAAAAEQQSAVAENISESVTRVRDIGDQSASATEQTAGASAELARLGVEL 641



 Score = 42.7 bits (99), Expect = 6e-08
 Identities = 73/389 (18%), Positives = 150/389 (38%), Gaps = 43/389 (11%)

Query: 352 LANSFNKMAKDIKELHSMLDADKLSLAKTLKEIFDIMDHLAEGDFSVRADENRHK--NKL 409
           +ANS +  AK   ELH  + A   +L   L +     D  A  D ++   E      ++ 
Sbjct: 200 VANSSDAAAKSWGELHGNVTAIGSNLKVWLND-----DQQASMDKALAELEQYRAAFDEF 254

Query: 410 QKTINHAIENVSKMMENLKSEITVLSDELEDVGEGLKRAKETSEQVTDAANQVATAAADQ 469
           ++     +E    M +  +  I    + L +    +++ + +S  +      +A      
Sbjct: 255 RQNRGERLELERSMAQQSEVVIAAADEALANASNAMQQQQRSSYLLLGVIGALAIFVGLL 314

Query: 470 SAK---------LQDTSDELEKTAKAADMVYNDAEQSVDSAIEVKDNSETGVKKVENAID 520
           +A          L+ T  + ++ A   D+ +++A    D            V +++NA+ 
Sbjct: 315 AATVISRMIVGPLRSTVQQAQRVANG-DLTHSEASARRDE-----------VGQLQNAMH 362

Query: 521 TM-QKITNVIDELGKSIQELGEESKKINEVTVLIKDVAEQTGLLALNASIEAARAGDAGK 579
            M Q + N+I  +G  + ++   + +++ VT        QT        +E  +   A  
Sbjct: 363 GMTQSLRNLIGRIGGGVSQIAAAADQLSAVTA-------QTSAGVQTQRVETEQVATAMH 415

Query: 580 GFAVVASEIKSLAEEIKKSVEDINRTINGINKKVETTIDLGLAGR--DEVDRGVVAIDEV 637
             A    E+   AE+   +    ++     ++ V+  +  G  G    EVD+   AI+ +
Sbjct: 416 EMAATVQEVARNAEQASIAARQADQQARQGDRVVQDAV--GQIGNLASEVDQSAHAIEAL 473

Query: 638 NSAFMKIKESVETSAKMIAQIKDNAKNASNNTQEALRNVQDIASISEEFAATAEELTASS 697
           ++   +I   +E    +  Q    A NA+     A    +  A +++E  A A     S+
Sbjct: 474 HAESGRIGSVLEVIRAVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALARRTHDST 533

Query: 698 EEQNRAV---EEIDASAEKMMEISRKLAE 723
           EE    +   + +   A + M+ SR L +
Sbjct: 534 EEIEGLIANLQRVAQQAVEQMQSSRSLTQ 562