Pairwise Alignments

Query, 731 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 640 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  130 bits (328), Expect = 2e-34
 Identities = 84/326 (25%), Positives = 155/326 (47%), Gaps = 12/326 (3%)

Query: 377 LAKTLKEIFDIMDHLAEGDFSVRADENRHKNKLQKTINHAIENVSKMMENLKSEITVLSD 436
           + + L++   I++ +A GD +      R             + +  + + ++   T L +
Sbjct: 313 ITRPLRDTLAIVERIASGDLTHTEAVTRR------------DELGVLQQGIQRMGTTLRE 360

Query: 437 ELEDVGEGLKRAKETSEQVTDAANQVATAAADQSAKLQDTSDELEKTAKAADMVYNDAEQ 496
            +  + +G+ +    +E+++    Q +     Q  +    +  + + +     V  +AEQ
Sbjct: 361 LISGIRDGVTQIASAAEELSAVTEQTSAGVNSQKVETDQVATAMHEMSATVHEVARNAEQ 420

Query: 497 SVDSAIEVKDNSETGVKKVENAIDTMQKITNVIDELGKSIQELGEESKKINEVTVLIKDV 556
           +  +A +    +  G K V  AI  ++++   +     ++  L ++S KI +V  +IK V
Sbjct: 421 ASVAASDADQQARDGDKVVGEAIQQIERLAAEVVRSSDAMNVLEQDSDKIGKVMDVIKAV 480

Query: 557 AEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGINKKVETT 616
           AEQT LLALNA+IEAARAG+AG+GFAVVA E++ LA+  ++S E+I   +  +       
Sbjct: 481 AEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQQSTEEIEGLVAALQNGTRQV 540

Query: 617 IDLGLAGRDEVDRGVVAIDEVNSAFMKIKESVETSAKMIAQIKDNAKNASNNTQEALRNV 676
             + L  R   D  V       ++   I  +V +   M  QI   A+  S+   E  R++
Sbjct: 541 SGIMLGSRTLTDSSVELTRRAGTSLESITRTVSSIQAMNQQIAAAAEQQSSVADEISRSI 600

Query: 677 QDIASISEEFAATAEELTASSEEQNR 702
            ++  +SE+ A  +EE  ASS E  R
Sbjct: 601 VNVRDVSEQTAEASEETAASSVELAR 626



 Score = 31.6 bits (70), Expect = 1e-04
 Identities = 53/260 (20%), Positives = 89/260 (34%), Gaps = 44/260 (16%)

Query: 483 TAKAADMVYNDAEQSVDSAIEVKDNS---------------ETGVKKVENAIDTMQKITN 527
           T    D     A Q +DSAI   D                 E+ ++   +++D  +  T 
Sbjct: 190 TGNPNDKTETAAFQQLDSAISHLDRFKAAFGPANREQIAQFESALRNYRSSVDVFKATTQ 249

Query: 528 VIDELGKSIQELGEESKKINEVTVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASE 587
               + K +   G    K+ E         E  GL       + A A     G  V+   
Sbjct: 250 TAASVRKDLTTQGATIVKLGE---------ELYGLQMQMGKEDTAHARSLQIGCVVLVML 300

Query: 588 IKSLAEEIKKSVEDINRTINGINKKVETTIDLGLAGRDEVDRGVVAIDEVNSAFMKIKES 647
           +  LA  I      I R +      VE      L   + V R     DE+      I+  
Sbjct: 301 LGILAAVI--ITRQITRPLRDTLAIVERIASGDLTHTEAVTRR----DELGVLQQGIQRM 354

Query: 648 VETSAKMIAQIKDNAKNASNNTQEALRNVQDIASISEEFAATAEELTASSEEQNRAVEEI 707
             T  ++I+ I+D               V  IAS +EE +A  E+ +A    Q    +++
Sbjct: 355 GTTLRELISGIRD--------------GVTQIASAAEELSAVTEQTSAGVNSQKVETDQV 400

Query: 708 DASAEKMMEISRKLAEDADE 727
             +  +M     ++A +A++
Sbjct: 401 ATAMHEMSATVHEVARNAEQ 420