Pairwise Alignments

Query, 731 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 638 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  143 bits (361), Expect = 2e-38
 Identities = 93/324 (28%), Positives = 165/324 (50%), Gaps = 16/324 (4%)

Query: 381 LKEIFDIMDHLAEGDFS--VRADENRHKNKLQKTINHAIENVSKMMENLKSEITVLSDEL 438
           L+E  ++++ +A GD S  +  D      KLQ TI     ++ +++  ++  +T ++   
Sbjct: 315 LQETLEVVERVASGDLSRNLNVDRKDELGKLQATIQRMTVSLRELVGGIRDGVTQIASAA 374

Query: 439 EDVGEGLKRAKETSEQVTDAANQVATAAADQSAKLQDTSDELEKTAKAADMVYNDAEQSV 498
           E++    ++            +QVATA  + +A +Q+              V  +AE++ 
Sbjct: 375 EELSAVTEQTSAGVNSQKVETDQVATAMHEMTATVQE--------------VARNAEEAS 420

Query: 499 DSAIEVKDNSETGVKKVENAIDTMQKITNVIDELGKSIQELGEESKKINEVTVLIKDVAE 558
           ++A+     +  G + V  AI  ++++ + +    +++  L +ES KI  V  +IK VAE
Sbjct: 421 EAAVAADRQARDGERVVNEAIAQIERLASAVGNSSEAMGALKQESDKIGSVLDVIKSVAE 480

Query: 559 QTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGINKKVETTID 618
           QT LLALNA+IEAARAG+AG+GFAVVA E++SLA+  +KS E+I   I  +    +    
Sbjct: 481 QTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQKSTEEIEALIARLQSGTQQATT 540

Query: 619 LGLAGRDEVDRGVVAIDEVNSAFMKIKESVETSAKMIAQIKDNAKNASNNTQEALRNVQD 678
           +  + R+     V        +   I ++V +   M  QI   A+  S   +E  R++ +
Sbjct: 541 VMDSSRELSTSSVELTRRAGGSLANITKTVSSIQAMNQQIAAAAEEQSATAEEINRSIIN 600

Query: 679 IASISEEFAATAEELTASSEEQNR 702
           +  +SE+ +A +EE  ASS E  R
Sbjct: 601 VRDVSEQTSAASEETAASSVELAR 624



 Score = 71.2 bits (173), Expect = 1e-16
 Identities = 78/365 (21%), Positives = 157/365 (43%), Gaps = 34/365 (9%)

Query: 272 TIGMVFVGTPEAQFTQL-----VNNARNNTIIIALFGL--LIAVVISLVSSRSITKPINQ 324
           T+G+  + T     T+       ++A++  +IIA   L  ++ ++ + V +R IT P+ +
Sbjct: 258 TLGVSMLATSNDLITRQNKSRDADSAKSVQMIIAATALAMVLGILAAWVITRQITTPLQE 317

Query: 325 LEDGVHKFGSGDYDHTINVKTGDELEELANSFNKMAKDIKELHSMLDADKLSLAKTLKEI 384
             + V +  SGD    +NV   DEL +L  +  +M   ++EL   +      +A   +E+
Sbjct: 318 TLEVVERVASGDLSRNLNVDRKDELGKLQATIQRMTVSLRELVGGIRDGVTQIASAAEEL 377

Query: 385 FDIMDHLAEGDFSVRADENRHKNKLQKTINHAIENVSKMMENLKSEITVLSDELEDVGEG 444
             + +  + G  S + + ++    + + +   ++ V++  E   SE  V +D        
Sbjct: 378 SAVTEQTSAGVNSQKVETDQVATAMHE-MTATVQEVARNAEE-ASEAAVAAD-------- 427

Query: 445 LKRAKETSEQVTDAANQV---ATAAADQSAKLQDTSDELEKTAKAADMVYNDAEQ----S 497
            ++A++    V +A  Q+   A+A  + S  +     E +K     D++ + AEQ    +
Sbjct: 428 -RQARDGERVVNEAIAQIERLASAVGNSSEAMGALKQESDKIGSVLDVIKSVAEQTNLLA 486

Query: 498 VDSAIEVKDNSETG------VKKVENAIDTMQKITNVIDELGKSIQELGEESKKINEVTV 551
           +++AIE     E G        +V +     QK T  I+ L   I  L   +++   V  
Sbjct: 487 LNAAIEAARAGEAGRGFAVVADEVRSLAQRTQKSTEEIEAL---IARLQSGTQQATTVMD 543

Query: 552 LIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGINK 611
             ++++  +  L   A    A           +  +I + AEE   + E+INR+I  +  
Sbjct: 544 SSRELSTSSVELTRRAGGSLANITKTVSSIQAMNQQIAAAAEEQSATAEEINRSIINVRD 603

Query: 612 KVETT 616
             E T
Sbjct: 604 VSEQT 608



 Score = 25.4 bits (54), Expect = 0.009
 Identities = 24/128 (18%), Positives = 57/128 (44%), Gaps = 15/128 (11%)

Query: 589 KSLAEEIKKSVEDINRTINGINKKVETTIDLGLAGRDEVDRGVVAIDEVNSAFMKIKESV 648
           + +   +++++E + R  +G     + + +L +  +DE+ +    I  +    + ++E V
Sbjct: 309 RQITTPLQETLEVVERVASG-----DLSRNLNVDRKDELGKLQATIQRMT---VSLRELV 360

Query: 649 ETSAKMIAQIKDNAKNASNNTQEALRNVQDIASISEEFAATAEELTASSEEQNRAVEEID 708
                 + QI   A+  S  T++    V      +++ A    E+TA+       V+E+ 
Sbjct: 361 GGIRDGVTQIASAAEELSAVTEQTSAGVNSQKVETDQVATAMHEMTAT-------VQEVA 413

Query: 709 ASAEKMME 716
            +AE+  E
Sbjct: 414 RNAEEASE 421