Pairwise Alignments

Query, 731 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 673 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  135 bits (340), Expect = 7e-36
 Identities = 97/351 (27%), Positives = 172/351 (49%), Gaps = 40/351 (11%)

Query: 377 LAKTLKEIFDIMDHLAEGDFSVRADENRHKNKLQKTINHAIENVSKMMENLKSEITVLSD 436
           L ++L E+   ++ LA GD + + D+  H    + +      N ++++++L+S I     
Sbjct: 346 LKRSLDEVNGALNVLASGDLTHKLDDTGHDEFAELS-----RNCNRLVDSLRSLIA---- 396

Query: 437 ELEDVGEGLKRAKETSEQVTDAANQVATAAADQSAKLQDTSDELEKTAKAADMVYNDAEQ 496
                             + D +NQ+A AA + SA    T+  +++     D V     +
Sbjct: 397 -----------------SILDRSNQLAAAAEETSAITSQTTIGIQEQKSQVDQVATATTE 439

Query: 497 SVDSAIEVKDNSETGVKKVENAIDTMQKITNVIDELGKSIQELGEE----SKKINEVTV- 551
              SA +V  +++  + +++ A +  Q +  + DE  ++I  L +E    SK IN+V   
Sbjct: 440 LSSSAHQVNMSADDALSQIKQADEETQHMRTIADENKRTILSLADEVAKASKVINKVHSD 499

Query: 552 ---------LIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDI 602
                    +I+ +AEQT LLALNA+IEAARAG+ G+GFAVVA E++SLA   + S  +I
Sbjct: 500 SASIGSILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQDSTREI 559

Query: 603 NRTINGINKKVETTIDLGLAGRDEVDRGVVAIDEVNSAFMKIKESVETSAKMIAQIKDNA 662
            + I  + +  +  + +   G+++    V   ++ N A   I  SV  +      I   A
Sbjct: 560 QQMIEVLQQGTQQAVAVMQLGQNQAQSCVEKTEQANQALQTISHSVHKAYDAGTHIAQAA 619

Query: 663 KNASNNTQEALRNVQDIASISEEFAATAEELTASSEEQNRAVEEIDASAEK 713
           +  +  +Q+    ++ IA+ISEE A  AE+   SS E  R  EE+ +S ++
Sbjct: 620 QEQNLVSQQVSEKLEHIAAISEETALGAEQTAKSSHEVARLAEELQSSVKE 670



 Score = 41.6 bits (96), Expect = 1e-07
 Identities = 89/489 (18%), Positives = 187/489 (38%), Gaps = 76/489 (15%)

Query: 311 SLVSSRSITKPINQLEDGVHKFGSGDYD----HTINVKTGDELEELANSFNK-MAKDIKE 365
           SL     + K   +LE+      S  +D     +   +T  E+   A + +  M   I  
Sbjct: 137 SLSQQEELLKLREKLENSADDASSNLFDLIDLESSQNQTEREIAAAAGAIDTTMTGIITT 196

Query: 366 LHSMLDADKLSLAKTLKEIFDIM--DHLAEGDFSVRADENRHKNKLQKTINHAIENVSKM 423
           ++ ++ A++ S  + + +  D M  +   + ++  R  E      L  T+N     V KM
Sbjct: 197 VYDLVAAEERSKYELISKELDYMLGEVKTKMEYISRHGEGIIDADLVSTLNDDSTKVLKM 256

Query: 424 MENLKSEITVLSDELEDV---GEGL----KRAKETSEQVTDAANQVATAAADQSAKLQDT 476
           +E   + +T+ S +++      E L    K A   +EQ+   A  + T   D S   Q  
Sbjct: 257 LEGKDTLVTLKSRQIDSTQLTSEKLTLVEKNALTVTEQMKRLAKDIETVTNDISN--QAL 314

Query: 477 SDELEKTAKAADMVYNDAEQSVDSAIEVKDNSETGVKKVENAIDTMQK--ITNVIDELGK 534
           +D    + +   +V      +V  +  V    +  + +V  A++ +    +T+ +D+ G 
Sbjct: 315 NDINSASLRTLILVVIAIVVAVVISFAVVRPLKRSLDEVNGALNVLASGDLTHKLDDTGH 374

Query: 535 SIQELGEESKKINEVT----VLIKDVAEQTGLLALNASIEAARAGDAGKGF--------- 581
              E  E S+  N +      LI  + +++  LA  A   +A       G          
Sbjct: 375 D--EFAELSRNCNRLVDSLRSLIASILDRSNQLAAAAEETSAITSQTTIGIQEQKSQVDQ 432

Query: 582 -AVVASEIKSLAEEIKKSVEDINRTINGINKKVETTIDLG-------LAGRDEVDRGVVA 633
            A   +E+ S A ++  S +D    I   +++ +    +        L+  DEV +    
Sbjct: 433 VATATTELSSSAHQVNMSADDALSQIKQADEETQHMRTIADENKRTILSLADEVAKASKV 492

Query: 634 IDEVNS-------------------AFMKIKESVETS-----AKMIAQIKDNAKNASNNT 669
           I++V+S                     + +  ++E +      +  A + D  ++ ++ T
Sbjct: 493 INKVHSDSASIGSILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRT 552

Query: 670 QEALRNVQDIASISEEFAA-----------TAEELTASSEEQNRAVEEIDASAEKMMEIS 718
           Q++ R +Q +  + ++               A+     +E+ N+A++ I  S  K  +  
Sbjct: 553 QDSTREIQQMIEVLQQGTQQAVAVMQLGQNQAQSCVEKTEQANQALQTISHSVHKAYDAG 612

Query: 719 RKLAEDADE 727
             +A+ A E
Sbjct: 613 THIAQAAQE 621