Pairwise Alignments

Query, 731 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 563 a.a., chemotaxis sensory transducer (NCBI) from Rhodospirillum rubrum S1H

 Score =  128 bits (321), Expect = 9e-34
 Identities = 107/422 (25%), Positives = 191/422 (45%), Gaps = 65/422 (15%)

Query: 299 IALFGLLIAVVISL-VSSRSITKPINQLEDGVHKFGSGDYDHTIN-VKTGDELEELANS- 355
           +A  G+++ V+  L ++ R + +PI  L   +    +GD +  I+  +  DE+ ++A S 
Sbjct: 196 VAFGGIVLGVIAGLLIARRGMVQPIGSLVGSLQALTAGDLERAIDGTERKDEVGDIARSA 255

Query: 356 --FNKMAKDIKELHSMLDADKLSLAKTLKEIFDIMDHLAEGDFSVRADENRHKNKLQKTI 413
             F   A+  +EL     A++++ AK    I                        L +  
Sbjct: 256 LIFRDNARKAQELREAQAAEQVARAKRSAAI----------------------ESLTRDF 293

Query: 414 NHAIENVSKMMENLKSEITVLSDELEDVGEGLKRAKETSEQVTDAANQVATAAADQSAKL 473
           +HA+ +V  ++    +E       +E    GL     T++Q    A+ VATA    SA +
Sbjct: 294 DHAVSDVLGVVAGACAE-------METTAGGLSA---TADQTNIQASAVATATEQASASV 343

Query: 474 QDTSDELEKTAKAADMVYNDAEQSVDSAIEVKDNSETGVKKVENAIDTMQKITNVIDELG 533
           Q  +   E+ + +                     SE G +++E +    Q  +    +  
Sbjct: 344 QTVATAAEELSASI--------------------SEIG-RRMEQSSHVAQIASQEAAQTN 382

Query: 534 KSIQELGEESKKINEVTVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAE 593
            ++Q L + S +I  V  LI D+A QT LLALNA+IEAARAG+AGKGFAVVA E+K LA 
Sbjct: 383 ATVQSLADTSARIGAVIGLITDIANQTNLLALNATIEAARAGEAGKGFAVVAGEVKHLAS 442

Query: 594 EIKKSVEDINRTINGINKKVETTIDLGLAGRDEVDRGVVAIDEVNSAFMKIKESVETSAK 653
           +  K+ EDI   I  + +  E  +         +   V  I+E+N+    I  +VE  + 
Sbjct: 443 QTAKATEDIGTQIGAVQEATEGAV-------KAIASIVRRIEEINTISAAIAAAVEEQSA 495

Query: 654 MIAQIKDNAKNASNNTQEALRNVQDIASISEEFAATAEELTASSEEQNRAVEEIDASAEK 713
             A+I  N + A+  TQE    +  ++S + E    ++++ ++++  ++    +    E+
Sbjct: 496 ATAEIARNVQQAAAGTQEVSDTIVGVSSSAGETGNASQQVLSAAQALSKEAVALKGLVER 555

Query: 714 MM 715
            +
Sbjct: 556 FL 557



 Score = 48.1 bits (113), Expect = 1e-09
 Identities = 95/457 (20%), Positives = 179/457 (39%), Gaps = 82/457 (17%)

Query: 348 ELEELANSFNKMAKDIKE----LHSMLDADKLSLAKTLKEIFDIMDHLAEGDFSV---RA 400
           E E+    F+K     +E    L  ML A  LS   TL+E F  +++LA  + ++   RA
Sbjct: 76  EFEDAYGFFSKNKAQFEERITTLEGMLPASHLSEIATLRENF--VNYLAAAEKTIATARA 133

Query: 401 DENRHKNKLQKTINHAIENVSKMMEN-LKSEITVLSDELEDVGEGLKRAKETSEQ----- 454
           ++     + Q+ I  A+  VS+ + N L      LSD+L+D G  +  A + + Q     
Sbjct: 134 NQGATIGEAQRQIYDAV-TVSRAISNPLLDSTLALSDDLDDEGTKVGDAADATFQTLTRW 192

Query: 455 ------------------------VTDAANQVATAAADQSAKLQDTSDELEKTAKAAD-- 488
                                   V    + V +  A  +  L+   D  E+  +  D  
Sbjct: 193 MFGVAFGGIVLGVIAGLLIARRGMVQPIGSLVGSLQALTAGDLERAIDGTERKDEVGDIA 252

Query: 489 ---MVYNDAEQSVDSAIEVKDNSETGVKKVENAIDTMQK-----ITNVIDELGKSIQEL- 539
              +++ D  +      E +   +    K   AI+++ +     +++V+  +  +  E+ 
Sbjct: 253 RSALIFRDNARKAQELREAQAAEQVARAKRSAAIESLTRDFDHAVSDVLGVVAGACAEME 312

Query: 540 ---GEESKKINEVTVLIKDVA---EQ---------TGLLALNASI-EAARAGDAGKGFAV 583
              G  S   ++  +    VA   EQ         T    L+ASI E  R  +     A 
Sbjct: 313 TTAGGLSATADQTNIQASAVATATEQASASVQTVATAAEELSASISEIGRRMEQSSHVAQ 372

Query: 584 VASEIKSLAEEIKKSVEDINRTINGI--------NK----KVETTIDLGLAGRDEVDRG- 630
           +AS+  +      +S+ D +  I  +        N+     +  TI+   AG  E  +G 
Sbjct: 373 IASQEAAQTNATVQSLADTSARIGAVIGLITDIANQTNLLALNATIEAARAG--EAGKGF 430

Query: 631 VVAIDEVNSAFMKIKESVETSAKMIAQIKDNAKNASNNTQEALRNVQDIASISEEFAATA 690
            V   EV     +  ++ E     I  +++  + A       +R +++I +IS   AA  
Sbjct: 431 AVVAGEVKHLASQTAKATEDIGTQIGAVQEATEGAVKAIASIVRRIEEINTISAAIAAAV 490

Query: 691 EELTASSEEQNRAVEEIDASAEKMMEISRKLAEDADE 727
           EE +A++ E  R V++  A  +++ +    ++  A E
Sbjct: 491 EEQSAATAEIARNVQQAAAGTQEVSDTIVGVSSSAGE 527