Pairwise Alignments
Query, 731 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2
Subject, 565 a.a., chemotaxis sensory transducer (NCBI) from Rhodospirillum rubrum S1H
Score = 129 bits (325), Expect = 3e-34
Identities = 104/414 (25%), Positives = 183/414 (44%), Gaps = 58/414 (14%)
Query: 298 IIALFGLLIAVVISLVSSRSITKPINQLEDGVHKFGSGDYDHTINVKTG-DELEELANSF 356
++AL LI + L+ +R ITKP+ + +G+ DY ++++ E+ +A++F
Sbjct: 196 LMALVAALILGGVGLIIARGITKPLKTVVEGLDGLADRDYRRSLDIPASRSEVGRIASAF 255
Query: 357 NKMAKDIKELHSMLDADKLSLAKTLKEIFDIMDHLAEGDFSVRADENRHKNKLQKTINHA 416
++ + E A E R +N ++T A
Sbjct: 256 ERLRGLLLE----------------------------------AAEERRQNA-ERTEQAA 280
Query: 417 IENVSKMMENLKSEITVLSDELEDVGEGLKRAKETSEQVTDAANQVATAAADQSAKLQDT 476
+ +M+ + D + +G + + ++ ++ A + + A+ +A ++
Sbjct: 281 LARKEEMLALASRFENQIGDLVNGLGSASEALRVSASTMSSGAEETLSQASTVTAAASES 340
Query: 477 SDELEKTAKAADMVYNDAEQSVDSAIEVKDNSETGVKKVENAIDTMQKITNVIDELGKSI 536
S+ + A A + + + ++ A + T V++V DE K++
Sbjct: 341 SENTQTVAAATEELASSIQEISRQASHSNAMARTAVERV--------------DETNKTV 386
Query: 537 QELGEESKKINEVTVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIK 596
L + ++ +V LI D+A QT LLALNA+IEAARAG+AGKGFAVVA E+KSLA++
Sbjct: 387 AALNSAALRVGDVVALITDIASQTNLLALNATIEAARAGEAGKGFAVVAGEVKSLAQQTA 446
Query: 597 KSVEDINRTINGINKKVETTIDLGLAGRDEVDRGVVAIDEVNSAFMKIKESVETSAKMIA 656
K+ EDI+R I I +T+ A + + + EV E + K I+
Sbjct: 447 KATEDISRQIEDIQSVTTSTVQAISA----IGESINGLSEVAGMIAAAVEEQNAATKEIS 502
Query: 657 QIKDNAKNASNNTQEALRNVQDIASISEEFAA----TAEELTASSEEQNRAVEE 706
A+ AS A+ V + A E AA AE+L ++E N AV +
Sbjct: 503 MNIQRAEGASREVSGAISLVSEAARSGGETAADVLGAAEDLFHRNKELNTAVSD 556
Score = 47.0 bits (110), Expect = 3e-09
Identities = 49/239 (20%), Positives = 103/239 (43%), Gaps = 27/239 (11%)
Query: 485 KAADMVYNDAEQSVDSAIEVKDNSETGVKKVENAIDTMQKITNVIDELGKSIQELGEESK 544
+AA+ +AE++ +A+ K+ + EN ++G + LG S+
Sbjct: 264 EAAEERRQNAERTEQAALARKEEMLALASRFEN-------------QIGDLVNGLGSASE 310
Query: 545 KINEVTVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINR 604
+ + AE+T AS A A ++ + VA+ EE+ S+++I+R
Sbjct: 311 ALRVSASTMSSGAEET---LSQASTVTAAASESSENTQTVAAA----TEELASSIQEISR 363
Query: 605 TINGINKKVETTIDLGLAGRDEVDRGVVAIDEVNSAFMKIKESVETSAKMIAQIKDNAKN 664
+ N T ++ DE ++ V A+ NSA +++ + V + +Q A N
Sbjct: 364 QASHSNAMARTAVERV----DETNKTVAAL---NSAALRVGDVVALITDIASQTNLLALN 416
Query: 665 ASNNTQEALRNVQDIASISEEFAATAEELTASSEEQNRAVEEIDASAEKMMEISRKLAE 723
A+ A + A ++ E + A++ ++E+ +R +E+I + ++ + E
Sbjct: 417 ATIEAARAGEAGKGFAVVAGEVKSLAQQTAKATEDISRQIEDIQSVTTSTVQAISAIGE 475
Score = 32.3 bits (72), Expect = 7e-05
Identities = 37/206 (17%), Positives = 76/206 (36%), Gaps = 45/206 (21%)
Query: 556 VAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGI-NKKVE 614
+A Q L+ L A + A G G +A I K ++ + ++G+ ++
Sbjct: 187 IASQARLIGLMALVAALILGGVGL----------IIARGITKPLKTVVEGLDGLADRDYR 236
Query: 615 TTIDLGLAGRDEVDRGVVAIDEVNSAFMKIKESVETSAKMIAQ----------------- 657
++D+ A R EV R A + + ++ E +A+ Q
Sbjct: 237 RSLDIP-ASRSEVGRIASAFERLRGLLLEAAEERRQNAERTEQAALARKEEMLALASRFE 295
Query: 658 ----------------IKDNAKNASNNTQEALRNVQDIASISEEFAATAEELTASSEEQN 701
++ +A S+ +E L + + + E + + + A++EE
Sbjct: 296 NQIGDLVNGLGSASEALRVSASTMSSGAEETLSQASTVTAAASESSENTQTVAAATEELA 355
Query: 702 RAVEEIDASAEKMMEISRKLAEDADE 727
+++EI A ++R E DE
Sbjct: 356 SSIQEISRQASHSNAMARTAVERVDE 381
Score = 27.7 bits (60), Expect = 0.002
Identities = 19/108 (17%), Positives = 47/108 (43%), Gaps = 2/108 (1%)
Query: 620 GLAGRDEVDRGVVAIDEVNSAFMKIKESVETSAKMIAQIKDNAKNASNNTQEALRNVQDI 679
GL E R V+ ++S + T ++ +N + + T+E ++Q+I
Sbjct: 304 GLGSASEALR--VSASTMSSGAEETLSQASTVTAAASESSENTQTVAAATEELASSIQEI 361
Query: 680 ASISEEFAATAEELTASSEEQNRAVEEIDASAEKMMEISRKLAEDADE 727
+ + A A +E N+ V ++++A ++ ++ + + A +
Sbjct: 362 SRQASHSNAMARTAVERVDETNKTVAALNSAALRVGDVVALITDIASQ 409