Pairwise Alignments

Query, 731 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 730 a.a., methyl-accepting chemotaxis protein from Rhodopseudomonas palustris CGA009

 Score =  132 bits (333), Expect = 5e-35
 Identities = 114/448 (25%), Positives = 197/448 (43%), Gaps = 70/448 (15%)

Query: 262 YVPLKDSNGATIGMVFVGTPEAQFTQLVN------NARNNTIIIALFG-----LLIAVVI 310
           Y P+      T   V +  P +      N      N R N+ I    G     +++A+ +
Sbjct: 319 YSPISVGRTGTPWSVLISVPRSVVLASANELDTALNDRANSAIFWQLGTGILVVVLAITV 378

Query: 311 SLVSSRSITKPINQLEDGVHKFGSGDYDHTINVKTGDELEELANSFNKMAKDIKELHSML 370
              ++RSI +PI    +       G+ D  ++++  DE+  LA S   M  ++K      
Sbjct: 379 IAFAARSIARPIGDCANFADGIAKGELDQKLDIEQADEVGVLAASLRTMQGELKS----- 433

Query: 371 DADKLSLAKTLKEIFDIMDHLAEGDFSVRADENRHKNKLQKTINHAIENVSKMMENLKSE 430
                S+A+  ++        A  D + + D N   +K +  +   +E VS         
Sbjct: 434 -----SIAQRAED-------QANADRTRQRDMNDMADKFESAVGRIVETVSSA------- 474

Query: 431 ITVLSDELEDVGEGLKRAKETSEQVTDAANQVATAAADQSAKLQDTSDELEKTAKAADMV 490
               S ELE     L    E S+Q+T   + VA+A+ + S+ +Q  +   E+ + + D +
Sbjct: 475 ----STELEVSAGRLTTTAERSQQLT---SMVASASEEASSNVQSVATATEEMSASVDEI 527

Query: 491 YNDAEQSVDSAIEVKDNSETGVKKVENAIDTMQKITNVIDELGKSIQELGEESKKINEVT 550
               ++S   A E              A+   QK  + + EL K+   +G+       V 
Sbjct: 528 SRQVQESSRIANE--------------AVHQAQKTNDRVGELAKAATRIGD-------VV 566

Query: 551 VLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGIN 610
            LI  +A QT LLALNA+IEAARAG+AG+GFAVVA+E+K LAE+  K+  +I+  I+GI 
Sbjct: 567 ELINTIAGQTNLLALNATIEAARAGEAGRGFAVVAAEVKQLAEQTAKATGEISAQISGIQ 626

Query: 611 KKVETTIDLGLAGRDEVDRGVVAIDEVNSAFMKIKESVETSAKMIAQIKDNAKNASNNTQ 670
                ++        E+   +  I E+  +   I  +VE       +I  N + AS  T 
Sbjct: 627 SATGESV----TAIKEITDTIGHISEIAGS---IASAVEQQGAATREISRNIQQASRGTN 679

Query: 671 EALRNVQDIASISEEFAATAEELTASSE 698
           +   N+ D+   + E  + + ++ A+++
Sbjct: 680 QVTGNISDVQRGASETGSASSQVLAAAQ 707



 Score = 43.1 bits (100), Expect = 5e-08
 Identities = 41/165 (24%), Positives = 85/165 (51%), Gaps = 14/165 (8%)

Query: 565 LNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGINKKVETTIDLG-LAG 623
           L+  ++  +A + G    V+A+ ++++  E+K S+    R  +  N       D+  +A 
Sbjct: 405 LDQKLDIEQADEVG----VLAASLRTMQGELKSSIAQ--RAEDQANADRTRQRDMNDMAD 458

Query: 624 RDEVDRGVVAIDEVNSAFMKIKES---VETSAKMIAQIKDNAKNASNNTQEALRNVQDIA 680
           + E   G + ++ V+SA  +++ S   + T+A+   Q+     +AS   +EA  NVQ +A
Sbjct: 459 KFESAVGRI-VETVSSASTELEVSAGRLTTTAERSQQLTSMVASAS---EEASSNVQSVA 514

Query: 681 SISEEFAATAEELTASSEEQNRAVEEIDASAEKMMEISRKLAEDA 725
           + +EE +A+ +E++   +E +R   E    A+K  +   +LA+ A
Sbjct: 515 TATEEMSASVDEISRQVQESSRIANEAVHQAQKTNDRVGELAKAA 559