Pairwise Alignments

Query, 731 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 674 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  130 bits (326), Expect = 3e-34
 Identities = 90/348 (25%), Positives = 171/348 (49%), Gaps = 40/348 (11%)

Query: 377 LAKTLKEIFDIMDHLAEGDFSVRADENRHKNKLQKTINHAIENVSKMMENLKSEITVLSD 436
           L  +L ++ + ++ LA G+ + + D++ H    + +      N ++++++L++ I     
Sbjct: 347 LKNSLDKVNNALNILASGNLTHKLDDSGHDEFAELS-----RNCNRLVDSLRTLI----- 396

Query: 437 ELEDVGEGLKRAKETSEQVTDAANQVATAAADQSAKLQDTSDELEKTAKAADMVYNDAEQ 496
                           + + D +NQ+A AA + SA    T+  +++     D V     Q
Sbjct: 397 ----------------QGILDRSNQLAAAAEETSAITAQTTAGIQEQKNQVDQVATATTQ 440

Query: 497 SVDSAIEVKDNSETGVKKVENAIDTMQKITNVIDELGKSIQELGEE-------------- 542
              SA++V  +++  + ++  A +  Q +  + DE  ++I  L +E              
Sbjct: 441 LSSSAMQVSTSADEALNQIRQADEEAQHMRAIADENKRTILALADEVAKAGQVINKVHSD 500

Query: 543 SKKINEVTVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDI 602
           S  I  +  +I+ +AEQT LLALNA+IEAARAG+ G+GFAVVA E++SLA   + S ++I
Sbjct: 501 SASIGSILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQDSTQEI 560

Query: 603 NRTINGINKKVETTIDLGLAGRDEVDRGVVAIDEVNSAFMKIKESVETSAKMIAQIKDNA 662
            + I  + +  +  + +   GR + +  V   ++ N A   I  +V  +      I + A
Sbjct: 561 QQMIQVLQQGTQEAVSVMELGRQQANSCVEKTEQANVALESISNAVHYAHDSGTHIANAA 620

Query: 663 KNASNNTQEALRNVQDIASISEEFAATAEELTASSEEQNRAVEEIDAS 710
           +  +  +Q+    ++ IA+ISEE A  A++   SS +  +  EE+ AS
Sbjct: 621 QEQNLVSQQVSEKLEHIAAISEETATGADQTAQSSHQVAQLAEELQAS 668



 Score = 44.7 bits (104), Expect = 2e-08
 Identities = 82/446 (18%), Positives = 167/446 (37%), Gaps = 70/446 (15%)

Query: 347 DELEELANSFNKMAKDIKELHSMLDADKLSLAKTLKEIFDIMDHLAEGDFS-VRADENRH 405
           + LE  A+    +  D+ +L +  D  +  +A T   I +   +L    +  V A E   
Sbjct: 150 ESLEGAADDTASLLLDLIDLETSQDPTEREIAATASNIDNSFSNLITSSYDLVNAKEKSK 209

Query: 406 KNKLQKTINHAIENVSKMME----------------NLKSEITVLSDELEDVGEGLKRAK 449
              + K +++ I      +E                N+ +E + +   L      LKR  
Sbjct: 210 YETILKELDYIISEAQNKLEYVSRHWEGVIDQEALDNINTEASKVFTMLNGPDSILKRKG 269

Query: 450 ETSE---QVTDAANQVATAAADQSAKLQDTSDELEKTAKAADMVYNDAEQSVDSA----- 501
           +  +   Q +   N V + A   +  +   +  +E T++A  +    A   +DSA     
Sbjct: 270 QQLDFNLQASQLLNTVESNATAVNQSMGSLNKAIESTSQAVSV---KAIDEIDSASYKTL 326

Query: 502 --------------IEVKDNSETGVKKVENAIDTMQK--ITNVIDELGKSIQELGEESKK 545
                         I V    +  + KV NA++ +    +T+ +D+ G    E  E S+ 
Sbjct: 327 ALVLIAIVVAVLVSIAVIRPLKNSLDKVNNALNILASGNLTHKLDDSGHD--EFAELSRN 384

Query: 546 INEVT----VLIKDVAEQTGLLALNASIEAARAGDAGKGF----------AVVASEIKSL 591
            N +      LI+ + +++  LA  A   +A       G           A   +++ S 
Sbjct: 385 CNRLVDSLRTLIQGILDRSNQLAAAAEETSAITAQTTAGIQEQKNQVDQVATATTQLSSS 444

Query: 592 AEEIKKSVEDINRTINGINKKVETTIDLG-------LAGRDEVDRGVVAIDEVNSAFMKI 644
           A ++  S ++    I   +++ +    +        LA  DEV +    I++V+S    I
Sbjct: 445 AMQVSTSADEALNQIRQADEEAQHMRAIADENKRTILALADEVAKAGQVINKVHSDSASI 504

Query: 645 KESVETSAKMIAQIKDNAKNASNNTQEALRNVQDIASISEEFAATAEELTASSEEQNRAV 704
              ++    +  Q    A NA+     A    +  A +++E  + A     S++E  + +
Sbjct: 505 GSILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQDSTQEIQQMI 564

Query: 705 EEIDASAEK---MMEISRKLAEDADE 727
           + +    ++   +ME+ R+ A    E
Sbjct: 565 QVLQQGTQEAVSVMELGRQQANSCVE 590