Pairwise Alignments

Query, 731 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 677 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  199 bits (506), Expect = 4e-55
 Identities = 174/727 (23%), Positives = 326/727 (44%), Gaps = 76/727 (10%)

Query: 11  KLLIFSIITVIIPIAILGIVSNNTITQDMKEQSADKLESSNEMANTIMDSRFTELCTLAE 70
           KLL+  I  V++  A +   +++ + +   ++SA  +    ++    +  R  +    A 
Sbjct: 8   KLLLMVICIVLLTAAAIFGTAHHFMKRGFADESAQTVTRLRDVVVRNIGDRSAKFLEEAA 67

Query: 71  YASYTQGVKTSIKTGNVDDLELRAETLKSASNADLVIFTGNGGSTIA----SSSGEGITL 126
             +       ++  G+       A+ L     +D +  T + G+ +A      +G+ +  
Sbjct: 68  LVAQHTDFVAAVAAGDGARATELAKRLMRDVGSDFMTVTDDKGNVLARGHSDKTGDSVLD 127

Query: 127 DSTILKVSKSSEKSGFEKIPEQTALKFSDADVTGTDSALSIVVAYPIYDDAGTLGYVAFI 186
             T+ +  +     G                ++GT    ++    PI  D   +G VA  
Sbjct: 128 QDTVRRALRGEASVGV---------------ISGTVVPFTLRAGAPIRRDGKVVGTVAIG 172

Query: 187 DVLNNDHTLVDSIKASTGDESTLFLENYRISTSVVSGNSRAVGTTASDV-VYNTVVKENT 245
             L  +   VD IK+ TG E T+F  + R+ T++V    RA+GT   +  V  TV     
Sbjct: 173 TSLVREG-FVDDIKSFTGLEVTVFKGDTRVMTTIVRDGKRAIGTRMDNPKVLETVFSAGK 231

Query: 246 EFMGSANVVGQSFLTKYVPLKDSNGATIGMVFVGTPEAQFTQLVNNARNNTIIIALFGLL 305
            F+    ++G  + T Y P++D  G TIGM F+G P A      +   ++++ +    L 
Sbjct: 232 TFLARNQILGSEYETAYWPIRDMEGKTIGMWFIGMPVASIIDAQDRVTDSSLAVMAGVLP 291

Query: 306 IAVVISLVSSRSITKPINQLEDGVHKFGSGDYDHTINVKTGDELEELANSFNKMAKDIKE 365
           + + ++ + +R++++PI +          GD    + V+TGDE+ +LA++   M   +K+
Sbjct: 292 VMIGVAWLLARALSRPIARTTAFATSVAGGDLGSELTVRTGDEVGQLADALRSMVGTLKD 351

Query: 366 -LHSMLDADKLSLAKTLKEIFDIMDHLAEGDFS-VRADENRHKNKLQKTINHAIENVSKM 423
            +    +  +L+  +T K        +AE + + VR ++ R +  L         + ++ 
Sbjct: 352 KIGESQEQTRLAAEETRKA----QQAMAEAEEARVRGEQARREGML---------HAARE 398

Query: 424 MENLKSEITVLSDELEDVGEGLKRAKETSEQVTDAANQVATAAADQSAKLQDTSDELEKT 483
           +E +   ++  S+EL             S Q+     Q +  A  QS +  +T+  +E+ 
Sbjct: 399 LEGIVDIVSAASEEL-------------SAQI----EQSSRGAELQSRRTGETAVAMEEM 441

Query: 484 AKAADMVYNDAEQSVDSAIEVKDNSETGVKKVENAIDTMQKITNVIDELGKSIQELGEES 543
                 V   A  + ++A + K  + TG   VE  ID +  +    + L + +  LG+ +
Sbjct: 442 NATVLEVARSAGLASETAGDAKAKATTGSGIVEAMIDGIGVVQRHSETLNRDMDALGKST 501

Query: 544 KKINEVTVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDIN 603
           ++I  +  +I D+A+QT LLALNA+IEAARAGDAG+GFAVVA E++ LAE+   +  ++ 
Sbjct: 502 ERIGAILGVISDIADQTNLLALNAAIEAARAGDAGRGFAVVADEVRKLAEKTMTATREVG 561

Query: 604 RTINGINKKVETTIDLGLAGRDEVDRGVVAIDEVNSAFMKIKESVETSAKMIAQIKDNAK 663
             I GI +  + +I        +V   V  ++ V     +  +S+     +   + D   
Sbjct: 562 EAIGGIQQGAKVSI-------AQVGETVREVESVTGRAREAGQSLGAIVALADSVSD--- 611

Query: 664 NASNNTQEALRNVQDIASISEEFAATAEELTASSEEQNR-AVEEIDASAEKMMEISRKLA 722
                       V+ IA+ SEE +A +EE+  + EE NR + E  DA  +  + +S +LA
Sbjct: 612 -----------QVRSIATASEEQSAASEEINRAVEEVNRISTETSDAMRQSALAVS-ELA 659

Query: 723 EDADEFK 729
             A   K
Sbjct: 660 AQAQRLK 666



 Score = 35.8 bits (81), Expect = 7e-06
 Identities = 30/187 (16%), Positives = 74/187 (39%)

Query: 411 KTINHAIENVSKMMENLKSEITVLSDELEDVGEGLKRAKETSEQVTDAANQVATAAADQS 470
           +T+N  ++ + K  E + + + V+SD  +        A   + +  DA    A  A +  
Sbjct: 488 ETLNRDMDALGKSTERIGAILGVISDIADQTNLLALNAAIEAARAGDAGRGFAVVADEVR 547

Query: 471 AKLQDTSDELEKTAKAADMVYNDAEQSVDSAIEVKDNSETGVKKVENAIDTMQKITNVID 530
              + T     +  +A   +   A+ S+    E     E+   +   A  ++  I  + D
Sbjct: 548 KLAEKTMTATREVGEAIGGIQQGAKVSIAQVGETVREVESVTGRAREAGQSLGAIVALAD 607

Query: 531 ELGKSIQELGEESKKINEVTVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKS 590
            +   ++ +   S++ +  +  I    E+   ++   S    ++  A    A  A  +K+
Sbjct: 608 SVSDQVRSIATASEEQSAASEEINRAVEEVNRISTETSDAMRQSALAVSELAAQAQRLKA 667

Query: 591 LAEEIKK 597
           + E++++
Sbjct: 668 IIEQMQR 674