Pairwise Alignments

Query, 731 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 614 a.a., ATP-binding protein from Methanococcus maripaludis JJ

 Score =  248 bits (632), Expect = 8e-70
 Identities = 166/529 (31%), Positives = 275/529 (51%), Gaps = 17/529 (3%)

Query: 8   IGTKLLIFSIITVIIPIAILGIVSNNTITQDMKEQSADKLESSNEMANTIMDSRFTELCT 67
           IGTKLLIFSII V+IPI ++  VS +TI+  M      +L+ +  + N  MDS   E  T
Sbjct: 9   IGTKLLIFSIIIVLIPIVMMSYVSTDTISDLMTSNQESELDINLGILNERMDSVLVEFDT 68

Query: 68  LAEYASYTQGVKTSIKTGNVDDLELRAETLKSASNADLVIFTGNGGSTIASSSGEG-ITL 126
           +  Y +    V  ++K  + D L+  A  L+  S  DL +FT   G+ I +S G+    +
Sbjct: 69  MTAYTANLPVVVNAVKNNDKDTLQDFANGLEDQSWIDLAVFTDADGNVICASYGDDDAEI 128

Query: 127 DSTILKVSKSSEKSGFEKIPEQTALKFSDADVTGTDSALSIVVAYPIYDDAGTLGYVAFI 186
            S + K+ + +    ++ +P + A K+SD ++ G D AL+I    PIYD    +G V ++
Sbjct: 129 SSYVKKLLEKNTIYAYDILPNEEASKYSDYELDGHD-ALTIFTVAPIYDGDSLIGAVTYV 187

Query: 187 DVLNNDHTLVDSIKASTGDESTLFLENYRISTSVVSGNSRAVGTTASDVVYNTVVKENTE 246
           D++N D   VD IK  TGDE++++L N RIST+        VG  A + +Y TV K+  +
Sbjct: 188 DIMNKDDYWVDRIKEVTGDEASIYLNNVRISTTCQKDGVDFVGELADEDIYETVSKKQ-D 246

Query: 247 FMGSANVVGQSFLTKYVPLKDSNGATIGMVFVGTPEAQFTQLVNNARNNTIIIALFGLLI 306
              +  + G  +L KY P+ + +G  IGM  VGTP++ FT L+N+       IA   L+I
Sbjct: 247 VRSTVTINGVPYLAKYSPIYNIDGEVIGMTCVGTPKSPFTVLLNSVIQKIFFIAFSSLII 306

Query: 307 AVVISLVSSRSITKPINQLEDGVHKFGSGDYDHTINVKTGDELEELANSFNKMAKDIKEL 366
           AV ++++ ++ I   I +L++    FG G+YD   ++ TGDELEELA SFNKMA +I++ 
Sbjct: 307 AVFVAVILNKKIVDSIKKLKNSAESFGRGNYDERASIDTGDELEELAESFNKMADEIRKS 366

Query: 367 HSMLDADKLSLAKTLKEIFDIMDHLAEGDFSVRADENRHKNKLQKTINHA----IENVSK 422
              L +D  +L  +  E+ ++ D+L     S+ + E R    L   + +      E   K
Sbjct: 367 DKKLKSDAHTLKTSFDELKEV-DNLKSEILSIVSHELR--TPLTAILGYVELLKDETAGK 423

Query: 423 MMENLKSEITVLSDELEDVGEGLKRAKETSEQVTDAANQVATAAADQSAKLQDTSDEL-- 480
           + E  K  I+V+S+      + LKR  +    +    N++     D+    ++ +D L  
Sbjct: 424 LSEKQKEFISVISEN----SDRLKRITDNMSDLVTVDNKILDIKRDKINLKKEVNDILRS 479

Query: 481 -EKTAKAADMVYNDAEQSVDSAIEVKDNSETGVKKVENAIDTMQKITNV 528
            +  A++ ++V  +   ++D   +     +     +ENAI   +K T V
Sbjct: 480 FDYFAESKNIVLLEDVDNLDIKGDKSKIHQVLSNLIENAIKFSKKQTKV 528



 Score = 29.3 bits (64), Expect = 6e-04
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 640 AFMKIKESVETSAKMIAQIKDNAKNASNNTQEALR-NVQDIASISEEFAATAEELTASSE 698
           AF  +  +V  +  +  +I D+ K   N+ +   R N  + ASI      T +EL   +E
Sbjct: 300 AFSSLIIAVFVAVILNKKIVDSIKKLKNSAESFGRGNYDERASID-----TGDELEELAE 354

Query: 699 EQNRAVEEIDASAEKMMEISRKLAEDADEFK 729
             N+  +EI  S +K+   +  L    DE K
Sbjct: 355 SFNKMADEIRKSDKKLKSDAHTLKTSFDELK 385