Pairwise Alignments

Query, 731 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 467 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis JJ

 Score =  464 bits (1194), Expect = e-135
 Identities = 264/475 (55%), Positives = 340/475 (71%), Gaps = 19/475 (4%)

Query: 262 YVPLKDSNGATIGMVFVGTPEAQFTQLVNNARNNTIIIALFGLLIAVVISLVSSRSITKP 321
           YVPL  +   +  ++FV      +  +  ++ N  I+  +F  ++++VIS      I K 
Sbjct: 7   YVPLLITAILSSAIIFVSF----YALIAASSFNLNILFVVF--IVSIVISTAIGYVILKK 60

Query: 322 -----INQLEDGVHKFGSGDYDHTINVKTGDELEELANSFNKMAKDIKELHSMLDADKLS 376
                +    +   K    +Y H       + +E + ++F K+ KD     + L   K  
Sbjct: 61  TYLDNVTNFLNSSSKIIGKEYKHCDE----EMVETVISNFEKLKKD----ENFLKTYKKD 112

Query: 377 LAKTLKEIFDIMDHLAEGDFSVRADENRHKNKLQKTINHAIENVSKMMENLKSEITVLSD 436
           +A T  E+  I   L +GDF++RAD NR  N LQ T N+AI NVS M+ +LK +I  L+ 
Sbjct: 113 VANTFSELHTIFKSLEQGDFTIRADTNRKYNALQVTTNNAIVNVSTMVNDLKKQIEYLNA 172

Query: 437 ELEDVGEGLKRAKETSEQVTDAANQVATAAADQSAKLQDTSDELEKTAKAADMVYNDAEQ 496
           EL    E L RA+ETSEQV DAA+QVATAAADQSAKLQD SD+LE T++    V + A+ 
Sbjct: 173 ELLKAKEDLVRAEETSEQVADAASQVATAAADQSAKLQDVSDQLEATSEITSAVTDAADD 232

Query: 497 SVDSAIEVKDNSETGVKKVENAIDTMQKITNVIDELGKSIQELGEESKKINEVTVLIKDV 556
           +V +A E+++NSE GVKKVENAI+TMQ ITNVI+ LGK+IQELG ESKKINEVTVLIKDV
Sbjct: 233 TVTAAFEIEENSEMGVKKVENAIETMQSITNVIENLGKAIQELGNESKKINEVTVLIKDV 292

Query: 557 AEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGINKKVETT 616
           AEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTING+N+KVE T
Sbjct: 293 AEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGVNRKVEAT 352

Query: 617 IDLGLAGRDEVDRGVVAIDEVNSAFMKIKESVETSAKMIAQIKDNAKNASNNTQEALRNV 676
           IDLG++G+DEVD+GV+AIDEVN AF+KIKESVET+++ I  IK NA+ A+NN + AL+N 
Sbjct: 353 IDLGISGKDEVDKGVIAIDEVNGAFLKIKESVETTSEKINSIKINAEKAANNVENALKNA 412

Query: 677 QDIASISEEFAATAEELTASSEEQNRAVEEIDASAEKMMEISRKLAEDADEFKTK 731
           QDIASISEEFAATAEELTAS+EEQ+R + EID S E++ + S ++++D  +FKT+
Sbjct: 413 QDIASISEEFAATAEELTASAEEQSRIMNEIDDSIEEITKSSEQISKDVSKFKTE 467