Pairwise Alignments

Query, 731 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 630 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  131 bits (329), Expect = 1e-34
 Identities = 76/262 (29%), Positives = 135/262 (51%), Gaps = 7/262 (2%)

Query: 445 LKRAKETSEQVTDAANQVATAAADQSAKLQDTSDELE-------KTAKAADMVYNDAEQS 497
           + R    + Q+   A   + +AAD S +++   DE+        + A A + + ++AE +
Sbjct: 352 ISRMHNIAGQLEYQAKGSSASAADNSQRIEVQQDEVTMVATAVTEMASATEEIASNAEHT 411

Query: 498 VDSAIEVKDNSETGVKKVENAIDTMQKITNVIDELGKSIQELGEESKKINEVTVLIKDVA 557
             +A      S  G K+V  +  +++ + N +D  G+ I EL E S+KIN + + I  +A
Sbjct: 412 AQTAQNAVSLSNHGQKQVMQSQQSIRNLANEVDTAGRIISELNEHSQKINSILLTISGIA 471

Query: 558 EQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGINKKVETTI 617
           EQT LLALNA+IEAARAG+ G+GFAVVA E++ L++    S ++I   I  + +     +
Sbjct: 472 EQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHSSTQEIQAMIETLQQTAGKAV 531

Query: 618 DLGLAGRDEVDRGVVAIDEVNSAFMKIKESVETSAKMIAQIKDNAKNASNNTQEALRNVQ 677
                  D  +  V   +  + + ++I +++   + M +QI   A+  ++ T E  RN +
Sbjct: 532 KSMTQSHDMAETSVADANSASESLLQISKAINEISDMASQIATAAEEQTSVTSEINRNTE 591

Query: 678 DIASISEEFAATAEELTASSEE 699
            I  +SE  +  A+     S+E
Sbjct: 592 SIREVSENLSIEAQSAMVQSQE 613



 Score = 34.3 bits (77), Expect = 2e-05
 Identities = 43/213 (20%), Positives = 84/213 (39%), Gaps = 33/213 (15%)

Query: 512 VKKVENAIDTMQKITNVIDELGK--------SIQELGEESKKINEVTVLIKDVAEQTGLL 563
           V+++   I  M  I   ++   K        + Q +  +  ++  V   + ++A  T  +
Sbjct: 345 VERLHGMISRMHNIAGQLEYQAKGSSASAADNSQRIEVQQDEVTMVATAVTEMASATEEI 404

Query: 564 ALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGINKKVETTIDLGLAG 623
           A NA   A  A +A            SL+   +K V    ++I  +  +V+T      AG
Sbjct: 405 ASNAEHTAQTAQNA-----------VSLSNHGQKQVMQSQQSIRNLANEVDT------AG 447

Query: 624 RDEVDRGVVAIDEVNSAFMKIKESVETSAKMIAQIKDNAKNASNNTQEALRNVQDIASIS 683
           R         I E+N    KI   + T + +  Q    A NA+     A    +  A ++
Sbjct: 448 R--------IISELNEHSQKINSILLTISGIAEQTNLLALNAAIEAARAGEQGRGFAVVA 499

Query: 684 EEFAATAEELTASSEEQNRAVEEIDASAEKMME 716
           +E    ++   +S++E    +E +  +A K ++
Sbjct: 500 DEVRVLSQRTHSSTQEIQAMIETLQQTAGKAVK 532