Pairwise Alignments

Query, 731 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 495 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  129 bits (324), Expect = 4e-34
 Identities = 117/476 (24%), Positives = 217/476 (45%), Gaps = 84/476 (17%)

Query: 233 SDVVYN-TVVKENTEFMGS---ANVVGQSFL-TKYVPLKDSNGAT--IGMVFVGTP-EAQ 284
           S+ +Y  TVV    + +     A +V  S L T+ +   D    T  + + F   P +AQ
Sbjct: 76  SEQIYQITVVDHRGKLLAEDKQAEIVAASDLQTRELQFSDQGNPTGRLTIAFSTLPVKAQ 135

Query: 285 FTQLVNNARNNTIIIALFGLLIAVVISLVSSRSITKPINQLEDGVHKF--GSGDYDHTIN 342
            + L+       ++I    LL   VI ++  R +  P++++   + +   G GD  H + 
Sbjct: 136 LSDLLLGYFLQALLILAGSLL---VIFIILKRLVISPLDKVVAALEEIANGDGDLSHRLP 192

Query: 343 VKTGDELEELANSFNKMAKDIKELHSMLDADKLSLAKTLKEIFDIMDHLAEGDFSVRADE 402
           V++ DE+ +LAN+FN     ++++H                                   
Sbjct: 193 VESEDEIGKLANAFNGF---VEQIHG---------------------------------- 215

Query: 403 NRHKNKLQKTINHAIENVSKMMENLKSEITVLSDELEDVGEGLKRAKETSEQVTDAANQV 462
                    TI    E    ++ + K+  T+     + V   L   KET   VT A  Q+
Sbjct: 216 ---------TITRVHETSGLLLGDAKALGTLSQSNNQRVQAQL---KETEAAVT-AVTQL 262

Query: 463 ATAAADQSAKLQDTSDELEKTAKAADMVYNDAEQSVDSAIEVKDNSETGVKKVENAIDTM 522
           + +A + +   + T+D     A  AD   +D ++  DS + +                  
Sbjct: 263 SASANEVAINAKRTAD----AATQADRAVDDGQRQFDSGLAI-----------------T 301

Query: 523 QKITNVIDELGKSIQELGEESKKINEVTVLIKDVAEQTGLLALNASIEAARAGDAGKGFA 582
           +++   +    +S+ +L +E+++I+EV V+I  +AEQT LLALNA+IEAARAG+ G+GFA
Sbjct: 302 RQLAGELARSAQSVSQLQQETQRIDEVVVVISSIAEQTNLLALNAAIEAARAGEQGRGFA 361

Query: 583 VVASEIKSLAEEIKKSVEDINRTINGINKKVETTIDLGLAGRDEVDRGVVAIDEVNSAFM 642
           VVA E++SLA   +++  +I + I  +  +V  T+++  + +   ++GV   +E+     
Sbjct: 362 VVADEVRSLASRTQQATGEIQKMIQQVQSRVAETVNVMQSSQTLSNQGVNRSEEIKLVLS 421

Query: 643 KIKESVETSAKMIAQIKDNAKNASNNTQEALRNVQDIASISEEFAATAEELTASSE 698
           K+ + V   + M  ++   A+  +  T+   R + D+A++S   +  +E L  SSE
Sbjct: 422 KVTDLVSNISNMNIEVSHAAQEQTCVTEAISRTLNDLANVSGSASLDSEHLAQSSE 477