Pairwise Alignments

Query, 436 a.a., winged helix-turn-helix transcriptional regulator from Methanococcus maripaludis S2

Subject, 453 a.a., winged helix-turn-helix transcriptional regulator from Methanococcus maripaludis JJ

 Score =  820 bits (2118), Expect = 0.0
 Identities = 418/436 (95%), Positives = 429/436 (98%)

Query: 1   MFCSISAVDSYRFDEYSVIYSIDQNDNFYEEIDLKIYNNNSDDLYEISYTIPQETSNLTF 60
           MFCSISAVDSYRFD+YSVIYSIDQNDNFYEEI+LKIYNNNSDDLYEISYTIPQETSNLTF
Sbjct: 18  MFCSISAVDSYRFDDYSVIYSIDQNDNFYEEINLKIYNNNSDDLYEISYTIPQETSNLTF 77

Query: 61  NSSKEIDSYSITTDDAGSTEVSVRLTEPIGPWQTGDLLVSFTGEVSDIGGKKQVYIIVPA 120
           NSSKEIDSYSITTDDAG+TEVSV+LTEPIGPWQTGDLLVSFTGEVSDIGGKKQVYIIVPA
Sbjct: 78  NSSKEIDSYSITTDDAGATEVSVKLTEPIGPWQTGDLLVSFTGEVSDIGGKKQVYIIVPA 137

Query: 121 FDSTFKLSVQLPEGAAIVSPVKDVLSISPRDYTVGSNGKSIFVEWEKELTSEEKYFEVTI 180
           FDS FKLSVQLPEGAAIVSPVKDVLSISPRDYTVG+NGKSIFVEWEKELTSEEKYFEVTI
Sbjct: 138 FDSNFKLSVQLPEGAAIVSPVKDVLSISPRDYTVGTNGKSIFVEWEKELTSEEKYFEVTI 197

Query: 181 NYVLTGVITPSTTGENNEDLYRAISIVLGVLVVALIFFIYRNYNKVKMINELQNEINGLN 240
           NYVLTGVITPSTTGENNEDLYRA+SIVL VLVVALIFFIYRNYNKVKMINELQNEINGLN
Sbjct: 198 NYVLTGVITPSTTGENNEDLYRAVSIVLAVLVVALIFFIYRNYNKVKMINELQNEINGLN 257

Query: 241 KGLEISHLNLQNKNKELQRLEELNEHVLKELDLSKNTLRDYELKINELNEEILQCRAQVG 300
           KGLEISHLNLQNKNKELQRLEELNEHVLKELDLSKN L+DYELKINELNEEILQCR QVG
Sbjct: 258 KGLEISHLNLQNKNKELQRLEELNEHVLKELDLSKNKLKDYELKINELNEEILQCRDQVG 317

Query: 301 NHTKLKEELNSKDAVIKSLNDYKKLSEELKLKINELTGLISEKEKCIIKLKEKIGDYESH 360
           NHTKLKEELNSKDAVIKSLNDYKKLSEELKLKINEL GLI EKE+ II+LKEKIGDYESH
Sbjct: 318 NHTKLKEELNSKDAVIKSLNDYKKLSEELKLKINELNGLIGEKERYIIELKEKIGDYESH 377

Query: 361 KSETLMNILTDDEKQLIELIREHGSISQKEIVDITGLTKPKVSRMISDLEQRGMVRKVKI 420
           KSETLMNILTDDEKQLIELIREHGSISQKEIVD+TGLTKPKVSRMISDLEQRGMVRKVKI
Sbjct: 378 KSETLMNILTDDEKQLIELIREHGSISQKEIVDVTGLTKPKVSRMISDLEQRGMVRKVKI 437

Query: 421 GRINKIALSDDLDGSI 436
           GRINKIALS+DLDGSI
Sbjct: 438 GRINKIALSEDLDGSI 453