Pairwise Alignments

Query, 892 a.a., alanine--tRNA ligase from Methanococcus maripaludis S2

Subject, 873 a.a., Alanyl-tRNA synthetase (EC 6.1.1.7) from Pseudomonas fluorescens FW300-N2E2

 Score =  258 bits (660), Expect = 8e-73
 Identities = 241/908 (26%), Positives = 404/908 (44%), Gaps = 159/908 (17%)

Query: 63  EMVKEFTNFFDEKGHTPVKRSPVVAKRWRDDILLTIASIAVFQPWVTSGLVKPVKNPLVI 122
           E+ + F  FF+E+GHT V  S ++       +L T A +  F+     G  K      V 
Sbjct: 5   EIREAFLRFFEEQGHTRVASSSLIPGN-DPTLLFTNAGMNQFKDCFL-GQEKRAYTRAVS 62

Query: 123 AQPCIRL----NDIDNVGRTGRHLTCFTMGAHHAFN------------------------ 154
           +Q C+R     ND++NVG T RH T F M  + +F                         
Sbjct: 63  SQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSDKWLNLP 122

Query: 155 ---------SKDD--YKYWTDKTVEYCFELMQRLGIDGKTITFIESWWEGG--GNAGPCY 201
                    + DD  Y  WT K V    E M R+G +       +++W  G  G  GPC 
Sbjct: 123 KEKLWVTVYATDDEAYDIWT-KEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCT 181

Query: 202 EVI-THG------------------VELATLVFMQYKKIGNDY-EEIPLKIVDTGYGIER 241
           E+   HG                  +E+   VFMQ+ +  +     +P   VDTG G+ER
Sbjct: 182 EIFYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLER 241

Query: 242 FAWASQGTPTVYESLFSEIIEKLKEDAGIPEVDEKIMAESATLAGLMDIENVGDLRVLRQ 301
            +   Q   + YE                 ++ + +++ SA   G  + +N   L+V   
Sbjct: 242 ISAVLQHVHSNYEI----------------DLFQSLLSASAQAIGCTN-DNQASLKV--- 281

Query: 302 KVAEKIGMDVDELDKLISPLEYIYAIADHTRCLSFMFGDGIVPSNVKEGYLARLVLRKTL 361
                                    +ADH R   F+  DG++PSN   GY+ R ++R+  
Sbjct: 282 -------------------------VADHIRSCGFLIADGVLPSNEGRGYVLRRIIRRAC 316

Query: 362 RYMEKIGISMSI-KDIISMQLENMKEIYPELSAMKEYIMDVLDAEEKKYIQTVNRGRGIV 420
           R+  K+G   S    I++     M + +PEL + + +I  VL AEE+++ +T+ +G  I+
Sbjct: 317 RHGNKLGAKGSFFYQIVAALAAEMGDAFPELKSQQAHIERVLKAEEEQFAKTLEQGLKIL 376

Query: 421 ER-MAASKSEITLDDLI-ELYDSNGLPPEIVKDVVDDLNKKGKKTIAITVPDNFYT--IV 476
           E+ +A  K  +   D++ +LYD+ G P ++  D+  + N        +T+ +  +   + 
Sbjct: 377 EQDLAELKGNVVPGDVVFKLYDTYGFPMDLTGDIARERN--------LTLDEEGFEREME 428

Query: 477 AERHEEEKPEEVVSTKKELPELEVSKTELLFFKHPTQVEFEAKVLKIV------------ 524
           A+R               L +++V+ TE   +   T     AK++ I             
Sbjct: 429 AQRVRARSASSFGMDYNSLVKVDVA-TEFTGYAGTTG---SAKIVAIYKDGQSVDILSEG 484

Query: 525 -EKYVVLDKTLFYAEGGGQKYDIGQL----NDIEVMDVQKKNG-IVFHKVSDISKFKEGD 578
            E  +VLDKT FYAE GGQ  D G L    +  +V D  K  G  + H V          
Sbjct: 485 QEGVIVLDKTPFYAESGGQIGDSGYLQAGSSRFDVRDTTKTGGAFLHHGVLASGSLMIAA 544

Query: 579 TVKGAVNWDNRLKLMRNHTATHVINAAATRVLGKHVWQTGSNVDTEKGRLDITHYERISR 638
            V   V+ D R     NH+ATH+++AA  +VLG+HV Q GS VD+++ R D +H+E I  
Sbjct: 545 PVAAHVDADVRHATSLNHSATHLLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKP 604

Query: 639 EQVKEIERIANEIVLSKMPVNSTFMDRNDAEQKYGFTIYQGGVVPGDTLRIIEIEGTDVE 698
           EQ+K +E I N  +    PV +   D   A++K    ++  G   GD++R++ +    VE
Sbjct: 605 EQLKALEEIVNAEIRKNSPVETEETDIETAKRKGAMALF--GEKYGDSVRVLSMGDFSVE 662

Query: 699 ACGGTHCSNTSECGYIKVLKTERIQDGVERLEYSTGMGSVSEIASLEDTLIDSAEILGIP 758
            CGG H + T + G +K++    +  GV R+E  TG  +++ + + E+ L ++A ++   
Sbjct: 663 LCGGIHANRTGDIGLMKIISEGGVASGVRRIEAVTGAAALAYLNAAEEQLKEAATLIKGS 722

Query: 759 NDQLPKTVKRFFEEWKEQKKTIEELQKKVGELVKYELADKFENVGNYEVLVEQVSGTPNE 818
            D L   +    E  +  +K +E+LQ K       +L+ +  +V   +VL  ++ G   +
Sbjct: 723 RDNLIDKLSAVLERNRLLEKQLEQLQAKAASAAGDDLSAQAVDVKGVKVLAVRLDGQDGK 782

Query: 819 -LMSIADNL--AVGNKLIVL--MNENDYLL---CKRGENVELSMKDLIRNI-----GKGG 865
            L+++ D L   +G  +I+L  ++E   +L     +    +L   DL++       GKGG
Sbjct: 783 ALLALVDQLKNKLGRAVILLGSVHEEKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKGG 842

Query: 866 GKDNLAQG 873
           G+ ++AQG
Sbjct: 843 GRPDMAQG 850