Pairwise Alignments

Query, 892 a.a., alanine--tRNA ligase from Methanococcus maripaludis S2

Subject, 874 a.a., alanyl-tRNA synthetase (RefSeq) from Shewanella loihica PV-4

 Score =  248 bits (634), Expect = 9e-70
 Identities = 239/907 (26%), Positives = 400/907 (44%), Gaps = 161/907 (17%)

Query: 68  FTNFFDEKGHTPVKRSPVVAKRWRDDILLTIASIAVFQPWVTSGLVKPVKNPLVIAQPCI 127
           F  FF   GH  V  S +V       +L T A +  F+  V  G  K   +    AQ C+
Sbjct: 12  FLEFFRRNGHQVVDSSSLVPGN-DPTLLFTNAGMNQFKD-VFLGEDKRDYSRATTAQRCV 69

Query: 128 RL----NDIDNVGRTGRHLTCFTMGAHHAFNS---KDDYKY-WTDKTVEY---------- 169
           R     ND+DNVG T RH T F M  + +F     +D  ++ WT  T E           
Sbjct: 70  RAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQDAIRFAWTFLTEELKLPKERLCVT 129

Query: 170 -------CFELMQR-LGIDGKTITFI----------ESWWEGG--GNAGPCYEVI-THG- 207
                   FE+  + +G+  + I  I          +++W+ G  G  GPC E+   HG 
Sbjct: 130 VYETDDEAFEIWNKEIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCTEIFYDHGE 189

Query: 208 -----------------VELATLVFMQY-KKIGNDYEEIPLKIVDTGYGIERFAWASQGT 249
                            +E+  +VFMQY ++     + +P   VDTG GIER A   QG 
Sbjct: 190 HIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQADGTMDPLPKPSVDTGMGIERIAAIMQGV 249

Query: 250 PTVYE-SLFSEIIEKLKEDAGIPEVDEKIMAESATLAGLMDIENVGDLRVLRQKVAEKIG 308
            + YE  +F  +I+K  E  G+ +++ K                   LRV          
Sbjct: 250 HSNYEIDIFQSLIKKTAEILGVTDLENK------------------SLRV---------- 281

Query: 309 MDVDELDKLISPLEYIYAIADHTRCLSFMFGDGIVPSNVKEGYLARLVLRKTLRYMEKIG 368
                             +ADH R  +F+  DG++PSN   GY+ R ++R+ +R+  K+G
Sbjct: 282 ------------------VADHIRSCAFLVADGVMPSNEGRGYVLRRIIRRAVRHGNKLG 323

Query: 369 ISMSI-KDIISMQLENMKEIYPELSAMKEYIMDVLDAEEKKYIQTVNRGRGIVERMAASK 427
            + +    ++   +E M +   EL A +  +   L AEE+++ +T+ RG GI++   +  
Sbjct: 324 ATEAFFYKLVPTLIEVMGDAAKELVATQAIVEKALKAEEEQFARTLERGLGILDNALSQL 383

Query: 428 SEITLDD--LIELYDSNGLPPEIVKDVVDDLNKKGKKTIAITVPD-NFYTIVAERHEEEK 484
               LD     +LYD+ G P ++  DV  + +        ITV +  F   +AE+    +
Sbjct: 384 EGKELDGETAFKLYDTYGFPVDLTADVCRERD--------ITVDEAGFEAAMAEQRSRAQ 435

Query: 485 PEEVVSTKKELPELEVSKTELLFFKHPTQVEFEAKVLKIV-------------EKYVVLD 531
                 T         ++TE   +   + +  EAKV+ +              +  VVLD
Sbjct: 436 AAGQFDTDYNDSLKIDAETEFCGY---SDLNGEAKVIGLYVDGQAVDALAEGDQGVVVLD 492

Query: 532 KTLFYAEGGGQKYDIGQLN----DIEVMDVQKKNGIVFH----KVSDISKFKEGDTVKGA 583
            T FY E GGQ  D G L+    + EV D QK    + H    K   I+    G T+  A
Sbjct: 493 STPFYGESGGQCGDKGLLSAEGVEFEVKDTQKYGQAMGHIGLVKAGSIAM---GQTLNAA 549

Query: 584 VNWDNRLKLMRNHTATHVINAAATRVLGKHVWQTGSNVDTEKGRLDITHYERISREQVKE 643
           V+   R +   NH+ TH+++AA  +VLG HV Q GS V+ E+ R D +H+E + RE++K+
Sbjct: 550 VDKKLRHRTELNHSVTHLLHAALRQVLGTHVSQKGSLVEPERLRFDFSHFEAVKREELKQ 609

Query: 644 IERIANEIVLSKMPVNSTFMDRNDAEQKYGFTIYQGGVVPGDTLRIIEIEGTDVEACGGT 703
           +E + N  +     + +  MD + A++K    ++  G      +R++ +    +E CGGT
Sbjct: 610 VEDLVNTQIRRNHELKAEVMDIDQAKEKGAMALF--GEKYDSQVRVVTMGDFSIELCGGT 667

Query: 704 HCSNTSECGYIKVLKTERIQDGVERLEYSTGMGSVSEIASLEDTLIDSAEILGIPNDQLP 763
           H   T + G  K+     I  G+ R+E  TG  +++ +   +  L  +A +L   +  + 
Sbjct: 668 HVGRTGDIGLFKITSEGGIAAGIRRIEAVTGAAAIAYVGEQQAQLEQAASLLKGDSASVV 727

Query: 764 KTVKRFFEEWKEQKKTIEELQKKVGELVKYELADKFENVGNYEVLVEQVSGT-PNELMSI 822
             +K   ++ K+ +K + +L+ K+      +LA + + +   +VLV+ + G     L  +
Sbjct: 728 AKLKAQLDKTKQLEKELSQLKDKLAAATSADLAGEAQELAGVKVLVKLLEGVEAGALRGL 787

Query: 823 ADNL--AVGNKLIVLMNENDYLL-CKRGENVELSMK----DLIRNI-----GKGGGKDNL 870
            D L   + + ++VL    D  +    G   +L+ K    +L+  +     GKGGG+ ++
Sbjct: 788 QDELKQKLQSGIVVLGIAGDAKVNLIAGVTKDLTGKVKAGELVAMVAAQVGGKGGGRPDM 847

Query: 871 AQGKYSE 877
           AQ   SE
Sbjct: 848 AQAGGSE 854