Pairwise Alignments

Query, 575 a.a., S-layer protein from Methanococcus maripaludis S2

Subject, 538 a.a., S-layer protein from Methanococcus maripaludis JJ

 Score =  595 bits (1534), Expect = e-174
 Identities = 349/582 (59%), Positives = 421/582 (72%), Gaps = 51/582 (8%)

Query: 1   MAMSMKKIGAIAVGGAMVASALATGAFAAEKVGDVDAFAADVVADGNANVDIVVGSNAAA 60
           MAMSMKKIGAIAVGGAMVASALATGAFAAEKVGDVDAFAADVVADGNANVDIVVGSNAAA
Sbjct: 1   MAMSMKKIGAIAVGGAMVASALATGAFAAEKVGDVDAFAADVVADGNANVDIVVGSNAAA 60

Query: 61  LDVVSAANVAAKIGSLMFKEGTVEDGSAQITVSASAESDEIKDLWATAPAAIAGQDKALV 120
           LDVVSAAN+AAKIGSLMF EGTVEDG+A ++V A AESD+ + ++     A  G   A  
Sbjct: 61  LDVVSAANIAAKIGSLMFTEGTVEDGAATVSVKAEAESDD-EQVYDADDEANVGTFPATF 119

Query: 121 ITAPDDDYTAVATGILGFADGVPAGTGLNLFGITTADAAVDLEDLQTLMIVEDADPSGWD 180
           +T+ D DY  +      F D        + F IT     V L  L TL+ ++D DPS W 
Sbjct: 120 VTSADKDYNEL------FND--------SSFVITNY---VSLGKLDTLVEIDDIDPSEW- 161

Query: 181 FYGTGNDFEAAEVLVAVVNTETTVPASTFGVGTPDLEVLEDEVVYASLAFVEDQYGNAAG 240
            Y    D  AAE++ A V+       ST  VG  + ++ + +V Y S A   D   +   
Sbjct: 162 -YSDEED-NAAELVYATVS-------STSKVG--EFDINDSDVAYIS-AVTNDTIEDG-- 207

Query: 241 DYAALFPGMRIPLLGQEMVVVKLDTDDDLAIVGTEAYEGVIKQGDSYDVGNGYTVKIANV 300
            +  L PGMRIP LG+E V+VK+D+DDD  ++G E ++GVIK+G+SYD+GNGYTVK+ +V
Sbjct: 208 -FVKLQPGMRIPFLGEEYVLVKVDSDDDFVVIGKEVFDGVIKEGESYDLGNGYTVKVDSV 266

Query: 301 LKQSGTAY--KVDVQLLKDGKVVASKFDTVDKPAAPAAATQLKLVYKDMGIVVNAAWTDV 358
           L   GT    KV+V++LKDGK VA KFDT          TQ+K+VY D+G+VVN+AW +V
Sbjct: 267 LSPLGTTEEPKVNVKILKDGKTVAEKFDT----------TQIKMVYGDIGVVVNSAWENV 316

Query: 359 GDNYGYAELVIADNVVEMELGEEFIPDYEAYTVD----LTAAGLTLSDKATAAGTIV-GI 413
           G +YGYAELVI DNVV+ +LGEEF+PD+E Y  +    +T       D A+ +G +V G+
Sbjct: 317 GSDYGYAELVIVDNVVKADLGEEFLPDWELYLFNSDATITDIDDIFEDDASKSGLVVSGL 376

Query: 414 ALKYVGDDVDKISKDKTFTIADYAKLDFDEDSGKIALKFLMDESKDVNINIGEKVSVLNA 473
           ALKYVGDD + +     F IADY   D ++D     + F MD++K+V++ IG+ V+VLNA
Sbjct: 377 ALKYVGDDEEGLEGGDDFDIADYVTFDLEDDDDDTNVLFKMDQAKEVSLAIGQSVNVLNA 436

Query: 474 EIKLADIEAEAKEAVVMTAPIAVLDSEASLDAADKGLILVGGPVVNALTAELADAGLVAI 533
           EIKLA+I+AEAKEAVVMTAPIAVLDSEASLDAADKGLILVGGPVVNALTAELADAGLVAI
Sbjct: 437 EIKLAEIDAEAKEAVVMTAPIAVLDSEASLDAADKGLILVGGPVVNALTAELADAGLVAI 496

Query: 534 DNESPATLAVAAGAANGNDVLVVAGGDRAATEEAAEALIDML 575
           DNESPATLAVAAGAANGNDVLVVAGGDRAATEEAAEALIDML
Sbjct: 497 DNESPATLAVAAGAANGNDVLVVAGGDRAATEEAAEALIDML 538