Pairwise Alignments

Query, 575 a.a., S-layer protein from Methanococcus maripaludis S2

Subject, 528 a.a., S-layer protein from Methanococcus maripaludis JJ

 Score =  281 bits (720), Expect = 4e-80
 Identities = 195/582 (33%), Positives = 303/582 (52%), Gaps = 61/582 (10%)

Query: 1   MAMSMKKIGAIAVGGAMVASALATGAFAAEKVGDVDAFAAD-VVADGNANVDIVVGSNAA 59
           M   +KKIG I VG   V SA  T A+A EK G+++ F  D ++ +GN  V IVVG NAA
Sbjct: 1   MKSILKKIGCILVGST-VLSASITAAYALEKYGNINDFIDDDLIKNGNPEVYIVVGENAA 59

Query: 60  ALDVVSAANVAAKIGSLMFKEGTVEDGSAQITVSASAESDEIKDLWATAPAAIAGQDKA- 118
           ALDV SA  ++AKIG+L + E  +ED S  +      ES+ I  L  T     AG +K+ 
Sbjct: 60  ALDVTSANKISAKIGTLTYSETIIEDEST-VEYQIIGESESIDLLDGTDKLDSAGTEKSW 118

Query: 119 LVITAPDDDYTAVATGILGFADGVPAGTGLNLFGITTADAAVDLEDLQTLMIVEDADPSG 178
           +++T+ DDDY         F D    G   +  G + AD    L +   L+ V D DP  
Sbjct: 119 ILVTSADDDYAD------HFDDD--EGNSFSYSGFSEADQTKSLGNFGYLLEVGDIDPEN 170

Query: 179 WDFYGTGNDFEAAEVLVAVVNTETTVPASTFGVGTPDLEVLEDEVVYASLAFVEDQYGNA 238
              +   +D  A  V V + ++     +  + +G         ++VYAS+      Y N 
Sbjct: 171 ---HFESDDDAAEIVFVRITDSNKNAGSQNYDIGK--------DMVYASIV-----YPNQ 214

Query: 239 AGDYAA---LFPGMRIPLLGQEMVVVKLDTDDDLAIVGTEAYEGVIKQGDSYDVGNGYTV 295
              +     L  G  IP LG++  +V+++ DD++  +GT +Y+G ++QG+    G+ Y +
Sbjct: 215 VSAFKLTKDLKEGYEIPFLGKKYRIVQINEDDNIIYLGTASYDGTLEQGNYISSGD-YQI 273

Query: 296 KIANVLKQSGTAYKVDVQLLKDGKVVASKFDTVDKPAAPAAATQLKLVYKDMGIVVNAAW 355
            +  +L +SG  Y V++ +L++G ++    + +    +        ++  D+G+ V+  W
Sbjct: 274 VLGEIL-ESGDEYSVEISILRNGNIIEEHTEILRSDKS------FSVIAGDLGVTVHDVW 326

Query: 356 TDVGDNYGYAELVIADNVVEMELGEEFIPDYEAYTVDLTAAGLTLSDKATAAGTIVGIAL 415
           T+   + GYA++ I  ++ E+ELGEE++ ++E   V  T  G T+    T     VGIAL
Sbjct: 327 TNAAADTGYADITICRSLTELELGEEYVNNWEVRAV--TNTGGTIDFLKTYEDNTVGIAL 384

Query: 416 KYVGDDVDKISKDKTFTIADYAKLDFDE--DSGKIALKFLMDESKDVNINIGEKVSVLNA 473
            Y G D++ I+      IADY  L FD+  D  K+  +F  + +       G  +S    
Sbjct: 385 VYAGSDIEGINDGDRIKIADYVNLVFDDEDDLDKMVAEFKAERTVTTGSTGGTVIS---- 440

Query: 474 EIKLADIEAEAKEAVVMTAPIAVLDSEASLDAADKGLILVGGPVVNALTAELADAGLVAI 533
             K  ++            P  ++D E  LD ADK LIL+GGPV N LT EL + G + I
Sbjct: 441 --KSGEV------------PKIIMDDEIKLDEADKNLILIGGPVANKLTKELQNEGKIYI 486

Query: 534 DNESPATLAVAAGAANGNDVLVVAGGDRAATEEAAEALIDML 575
           DNESPAT ++  GAANGN+VLV+AGGDR +TE A  +LI+++
Sbjct: 487 DNESPATASLIEGAANGNNVLVIAGGDRYSTESAVLSLINLI 528