Pairwise Alignments

Query, 575 a.a., S-layer protein from Methanococcus maripaludis S2

Subject, 548 a.a., S-layer protein from Methanococcus maripaludis JJ

 Score =  409 bits (1052), Expect = e-118
 Identities = 248/585 (42%), Positives = 355/585 (60%), Gaps = 47/585 (8%)

Query: 1   MAMSMKKIGAIAVGGAMVASALATGAFAAEKVGDVDAFAADVVADGNANVDIVVGSNAAA 60
           MA+S+KKI +I +GG M+ + L++ AFA E+VGDVD+F +D+V+  N+N+DI+VGSN+ A
Sbjct: 1   MAISIKKIVSIGLGGLMLGTTLSSSAFAVEQVGDVDSFVSDIVSGNNSNIDIIVGSNSVA 60

Query: 61  LDVVSAANVAAKIGSLMFKEGTVEDGSAQITVSASAESDE---IKDLWATAPAAIAGQDK 117
            DVVSAAN+AAKIGSL F E   E  SA ++VSASA SD+   + D  A           
Sbjct: 61  SDVVSAANIAAKIGSLSFLEQHDESASATLSVSASASSDDFDLLNDDAADDSINFTSNGN 120

Query: 118 ALVITAPDDDYTAVATGILGFADGVPAGTGLNLFGITTADAAVDLEDLQTLMIVEDADPS 177
            L I   DDDY  V   I  + D           G+   + A  L  L TL  V+D DPS
Sbjct: 121 GLFIACADDDYADVLADIT-YDDST---------GLDADNGAKSLGKLSTLSSVDDIDPS 170

Query: 178 GWDFYGTGNDFEAAEVLVAVVNTETTVPASTFGVGTPDLEVLEDEVVYASLAFVEDQYGN 237
            W      +D +A E L A +N ++            +  + E+ + YA ++F +D   +
Sbjct: 171 DW----FNSDDDAYEFLFAKLNNDSG-----------EWNINEEGLAYAVISFKDD--AS 213

Query: 238 AAGDYAALFPGMRIPLLGQEMVVVKLDTDDDLAIVGTEAYEGVIKQGDSYDVGNGYTVKI 297
           +  D   L PG RIP +G+E V++ +  D D   +G E Y+GVIK+G+SY +GNGY VKI
Sbjct: 214 SFDDITTLCPGKRIPFMGEEWVIIGMSADKDSFALGKEVYDGVIKEGESYTLGNGYEVKI 273

Query: 298 ANVLKQ--SGTAYKVDVQLLKDGKVVASKFDTVDKPAAPAAATQLKLVYKDMGIVVNAAW 355
            N+++        KV+ QLLKDGKV+   FD            +L +    +G+ +N+AW
Sbjct: 274 LNIIQSLDDENECKVNAQLLKDGKVITEVFDN----------PRLNMCSNGIGVRINSAW 323

Query: 356 TDVGDNYGYAELVIADNVVEMELGEEFIPDYEAYTVDLTAAGLTLSD--KATAAGTI-VG 412
            ++G +YGYAELVI +N+  + LGEE+IPD+E Y +      L  +D  K+   G   VG
Sbjct: 324 QNIGSDYGYAELVIVNNMKCLSLGEEYIPDWETYGILKGNNTLEYTDDFKSFEYGQKKVG 383

Query: 413 IALKYVGDDVDKISKDKTFTIADYAK--LDFDEDSGKIALKFLMDESKDVNINIGEKVSV 470
           +ALKYVGDD++ I      TIA+Y    LD +++  K+++ F M+E K+V+I   +KV+V
Sbjct: 384 LALKYVGDDLEDIGSGDEITIANYGTFTLDDEDEDDKLSVFFEMNEEKEVSIVKNQKVNV 443

Query: 471 LNAEIKLADIEAEAKEAVVMTAPIAVLDSEASLDAADKGLILVGGPVVNALTAELADAGL 530
           LNAEI    I A  +E++ + AP+  LD+E S+++++  LILVGGP VN++T ELAD  L
Sbjct: 444 LNAEIVADAIFAGDEESLTVNAPVVKLDTETSMESSENPLILVGGPFVNSITKELADTRL 503

Query: 531 VAIDNESPATLAVAAGAANGNDVLVVAGGDRAATEEAAEALIDML 575
           +AI+++S ATL+V +  ANGNDVLVVAGGDR AT EAA ALI M+
Sbjct: 504 IAINDDSLATLSVVSETANGNDVLVVAGGDRIATTEAANALIAMI 548