Pairwise Alignments

Query, 590 a.a., ribosome biogenesis/translation initiation ATPase RLI from Methanococcus maripaludis S2

Subject, 564 a.a., ATP-binding cassette protein, ChvD family from Pseudomonas stutzeri RCH2

 Score = 89.0 bits (219), Expect = 5e-22
 Identities = 121/500 (24%), Positives = 196/500 (39%), Gaps = 87/500 (17%)

Query: 103 GLLGPNGVGKSTIIKALSGEMV-----------LNLNDLTETPDMKKVLDYFSGTELQNY 151
           G+LG NG GKST+++ ++G              +N+  L + P +          + +  
Sbjct: 45  GVLGLNGAGKSTLLRIMAGVDTEFDGEARAMPGINVGYLPQEPQL----------DPEKT 94

Query: 152 FEKLKNNGIKPIHKPQY-VDVLPKVVKGKVGELLKKVDEKGEFEKIINALEISNI----- 205
             ++    +  I   Q  +D +         +      E+ + E I+ A +  N+     
Sbjct: 95  VREVVEEAVGVIKDAQARLDAVYAAYAEPDADFDALAAEQAKLEAILQASDGHNLERQLE 154

Query: 206 ----------LDRTFDQLSGGELQRVAIAAACLREGDIYYFDEPTSWLDVKQRFSAAKVI 255
                      D     LSGGE +RVA+    L   D+   DEPT+ LD        + +
Sbjct: 155 VAADALRLPAWDAKVAHLSGGEKRRVALCRLLLSAPDMLLLDEPTNHLDADSVAWLERFL 214

Query: 256 REVAEGKKVVAVEHDLIVLDYLSDYIHIM---YGIP--SAYGVVTHPRGTRVG------- 303
            +      VVA+ HD   LD ++ +I  +    GIP    Y      +  R+        
Sbjct: 215 HDFPG--TVVAITHDRYFLDNVAGWILELDRGAGIPYEGNYSGWLEAKSARLAQESKQQS 272

Query: 304 -----INTYLDGFLKEENIRFRKSPI-----------VFEKRPPQDSTNRPL-------L 340
                +   L+   K    R  KS              F+KR   +    P        +
Sbjct: 273 AHEKAMKEELEWVRKGAKARQSKSKARLQRFEEMQSQEFQKRAETNEIYIPAGPRLGDKV 332

Query: 341 LDYTDISKKLGDFSLNVN-GGQIYQGEVVGILGPNGIGKTTFVKALAGVISPDSGEVT-G 398
           +++ +++K  GD  L  N    + +G +VG++G NG GK+T  + L G  +PDSG +  G
Sbjct: 333 IEFKNVTKGYGDRVLIDNLSFSVPKGAIVGVIGGNGAGKSTLFRMLMGKETPDSGSIEIG 392

Query: 399 DVKVSYKPQYISSDFEG--TV-EDLLMSITAIHTSYYKSEIIKPLALENILDSS----VK 451
           D            D EG  TV E +   +  I    Y+      +   N   +     VK
Sbjct: 393 DTVQLACVDQSRDDLEGGKTVWEAVSDGLDQIRIGNYEVPSRGYVGRFNFKGADQQKFVK 452

Query: 452 DLSGGELQRVSIAACLSQDADLYLIDEPSAFLDVEQRLTTSRVIRRMADEKEAAMFVVDH 511
           DLSGGE  R+ +A  L Q A++ L+DEPS  LDVE    T R +     +   +  V+ H
Sbjct: 453 DLSGGERGRLHLALTLKQGANVLLLDEPSNDLDVE----TLRSLEEALLDFPGSAIVISH 508

Query: 512 DILFQDYISDRFIVFSGIAG 531
           D  F D ++   + +    G
Sbjct: 509 DRWFLDRVATHILSYEDDGG 528



 Score = 58.5 bits (140), Expect = 7e-13
 Identities = 50/201 (24%), Positives = 83/201 (41%), Gaps = 47/201 (23%)

Query: 363 YQGEVVGILGPNGIGKTTFVKALAGVISPDSGEVTG--DVKVSYKPQYISSDFE------ 414
           + G  +G+LG NG GK+T ++ +AGV +   GE      + V Y PQ    D E      
Sbjct: 39  FPGAKIGVLGLNGAGKSTLLRIMAGVDTEFDGEARAMPGINVGYLPQEPQLDPEKTVREV 98

Query: 415 -----GTVEDLLMSITAIHTSY------YKSEIIKPLALENIL----------------- 446
                G ++D    + A++ +Y      + +   +   LE IL                 
Sbjct: 99  VEEAVGVIKDAQARLDAVYAAYAEPDADFDALAAEQAKLEAILQASDGHNLERQLEVAAD 158

Query: 447 -------DSSVKDLSGGELQRVSIAACLSQDADLYLIDEPSAFLDVEQRLTTSRVIRRMA 499
                  D+ V  LSGGE +RV++   L    D+ L+DEP+  LD +    +   + R  
Sbjct: 159 ALRLPAWDAKVAHLSGGEKRRVALCRLLLSAPDMLLLDEPTNHLDAD----SVAWLERFL 214

Query: 500 DEKEAAMFVVDHDILFQDYIS 520
            +    +  + HD  F D ++
Sbjct: 215 HDFPGTVVAITHDRYFLDNVA 235



 Score = 43.1 bits (100), Expect = 3e-08
 Identities = 44/190 (23%), Positives = 83/190 (43%), Gaps = 30/190 (15%)

Query: 97  PRDGVTGLLGPNGVGKSTIIKALSGEMV-----LNLNDLTETPDMKKVLDYFSGTELQNY 151
           P+  + G++G NG GKST+ + L G+       + + D  +   + +  D   G   +  
Sbjct: 356 PKGAIVGVIGGNGAGKSTLFRMLMGKETPDSGSIEIGDTVQLACVDQSRDDLEGG--KTV 413

Query: 152 FEKLKNNGIKPIHKPQYVDVLPKVVKGKVGELLKKVDEKGEFEKIINALEISNILDRTFD 211
           +E + ++G+  I    Y   +P   +G VG    K  ++ +F K                
Sbjct: 414 WEAV-SDGLDQIRIGNY--EVPS--RGYVGRFNFKGADQQKFVK---------------- 452

Query: 212 QLSGGELQRVAIAAACLREGDIYYFDEPTSWLDVKQRFSAAKVIREVAEGKKVVAVEHDL 271
            LSGGE  R+ +A    +  ++   DEP++ LDV+   S  + + +       + + HD 
Sbjct: 453 DLSGGERGRLHLALTLKQGANVLLLDEPSNDLDVETLRSLEEALLDFP--GSAIVISHDR 510

Query: 272 IVLDYLSDYI 281
             LD ++ +I
Sbjct: 511 WFLDRVATHI 520