Pairwise Alignments

Query, 590 a.a., ribosome biogenesis/translation initiation ATPase RLI from Methanococcus maripaludis S2

Subject, 638 a.a., ABC transporter ATPase component (RefSeq) from Shewanella amazonensis SB2B

 Score = 97.4 bits (241), Expect = 2e-24
 Identities = 120/488 (24%), Positives = 204/488 (41%), Gaps = 91/488 (18%)

Query: 104 LLGPNGVGKSTIIKALSGEMVLNLNDLTETPDMK------KVLDYFSGTELQNYFEKLKN 157
           ++G NG GKS+++K L GE+ L+  +L    D++            SG+      + LK 
Sbjct: 34  IVGRNGAGKSSLLKILDGEVHLDDGELNLATDVRISRLQQDPPKAESGSVYSYISQGLKE 93

Query: 158 NGIKPIHKPQYVDVLPKVVKGKVGELLKKVDEKGEFEKIINALEISNIL----------- 206
            G       Q    L          +LK+++        +N  ++   +           
Sbjct: 94  AGEVLERYHQLSHDLATADDTMQARMLKEMETLQAKLDHLNGWQLDTRIQAHCVRLGLDP 153

Query: 207 DRTFDQLSGGELQRVAIAAACLREGDIYYFDEPTSWLDVKQRFSAAKVIREVAEGKKVVA 266
           D+   +LSGG  ++VA+A A + E ++   DEPT+ LD+       + +  ++    +V 
Sbjct: 154 DKPLSELSGGWQRKVALARALVSEPELLLLDEPTNHLDIDTIEWLEQFL--LSYKGAIVF 211

Query: 267 VEHDLIVLDYLSDYIHIMYGIPSAYGVVTHPRGT--------------RVGINTYLDGFL 312
           + HD   ++ ++  I     +    GVVT   GT                  N   D  L
Sbjct: 212 ISHDRGFINRMATRI-----LDLDRGVVTSWPGTYQAYLEGKAEWLRHEAEANAQFDKKL 266

Query: 313 KEENIRFRKSPIVFEKRPPQDSTNRPLLLDYTDISKKL---GDFSLNVNGGQ-------- 361
            EE +  R+   +  +R   +   R L     + S++L   G+  +NV  G+        
Sbjct: 267 AEEEVWIRQG--IKARRTRNEGRVRALKALRMERSERLNRQGNVRMNVAEGERSGKLVFD 324

Query: 362 --------------------IYQGEVVGILGPNGIGKTTFVKALAGVISPDSGEV-TG-D 399
                               + +G+ + ++GPNG GK+T +K L G + P SG + TG  
Sbjct: 325 VSELNYNLADKDLVRDFSVSVMRGDRIALIGPNGCGKSTLIKLLIGQLEPQSGNIKTGTK 384

Query: 400 VKVSYKPQYISS-DFEGTVE----DLLMSITAIH-----TSYYKSEIIKPLALENILDSS 449
           ++V+Y  QY  + D E TVE    D   ++T         SY +  +  P        + 
Sbjct: 385 LEVAYFDQYRENLDEEKTVEENVGDGKQTVTVNGRDRHILSYLQDFLFSPARAR----TP 440

Query: 450 VKDLSGGELQRVSIAACLSQDADLYLIDEPSAFLDVEQRLTTSRVIRRMADEKEAAMFVV 509
           VK LSGGE  R+ +A  L + A+L ++DEP+  LD+E    T  ++  M  E +  + +V
Sbjct: 441 VKALSGGEKNRLLLARLLLRPANLIILDEPTNDLDIE----TLELLESMLTEYDGTLLIV 496

Query: 510 DHDILFQD 517
            HD  F D
Sbjct: 497 SHDRAFID 504



 Score = 48.9 bits (115), Expect = 6e-10
 Identities = 72/298 (24%), Positives = 120/298 (40%), Gaps = 74/298 (24%)

Query: 335 TNRPLLLDYTDISKKLGDFSLNVNGGQIYQGEVVGILGPNGIGKTTFVKALAGVISPDSG 394
           TN  L   Y  + K   D S+         GE V I+G NG GK++ +K L G +  D G
Sbjct: 7   TNGSLAYGYVPLLKN-ADLSIEA-------GERVCIVGRNGAGKSSLLKILDGEVHLDDG 58

Query: 395 EVT--GDVKVSYKPQ------------YISSDFE----------------GTVEDLLMS- 423
           E+    DV++S   Q            YIS   +                 T +D + + 
Sbjct: 59  ELNLATDVRISRLQQDPPKAESGSVYSYISQGLKEAGEVLERYHQLSHDLATADDTMQAR 118

Query: 424 -ITAIHTSYYKSEIIKPLALENIL-----------DSSVKDLSGGELQRVSIAACLSQDA 471
            +  + T   K + +    L+  +           D  + +LSGG  ++V++A  L  + 
Sbjct: 119 MLKEMETLQAKLDHLNGWQLDTRIQAHCVRLGLDPDKPLSELSGGWQRKVALARALVSEP 178

Query: 472 DLYLIDEPSAFLDVEQRLTTSRVIRRMADEKEAAMFVVDHDILFQDYISDRFIVFSGIAG 531
           +L L+DEP+  LD++    T   + +     + A+  + HD  F + ++ R +       
Sbjct: 179 ELLLLDEPTNHLDID----TIEWLEQFLLSYKGAIVFISHDRGFINRMATRILDLDRGVV 234

Query: 532 SSGTG---------SEPLQKRAGAN-KFLKEM---------GITFRRDPDTGRPRVNK 570
           +S  G         +E L+  A AN +F K++         GI  RR  + GR R  K
Sbjct: 235 TSWPGTYQAYLEGKAEWLRHEAEANAQFDKKLAEEEVWIRQGIKARRTRNEGRVRALK 292