Pairwise Alignments

Query, 590 a.a., ribosome biogenesis/translation initiation ATPase RLI from Methanococcus maripaludis S2

Subject, 555 a.a., ABC transporter, ATP-binding protein from Phaeobacter inhibens DSM 17395

 Score = 92.8 bits (229), Expect = 3e-23
 Identities = 125/504 (24%), Positives = 204/504 (40%), Gaps = 99/504 (19%)

Query: 103 GLLGPNGVGKSTIIKALSGEMVLNLNDLTETPDMKKVLDYFSGTELQNYFEKLKNNGIKP 162
           G++G NG GKST++K ++G +  +        +  KV       +L       +N  +  
Sbjct: 38  GVVGVNGAGKSTLMKIMAG-LDTDFTGEAWAAEGAKVGYLPQEPKLDESLTVRENVMLGV 96

Query: 163 IHKPQYVD----VLPKVVKGKVGELLKKVDEKGEFEKIINALEISNILDRTFD------- 211
             K   VD    +  ++ +    EL++++    +     N  ++ + +D + +       
Sbjct: 97  KAKKDKVDRFNQIAVEMAENYTDELMEEMTALQDSIDAENLWDLDSQIDISMEALRCPPD 156

Query: 212 -----QLSGGELQRVAIAAACLREGDIYYFDEPTSWLDVKQRFSAAKVIREVAEGK-KVV 265
                 LSGGE +RVA+    L   ++   DEPT+ LD +   + A + + + + K  ++
Sbjct: 157 DAEIANLSGGERRRVALCKLLLEAPEMLLLDEPTNHLDAE---TIAWLQQHLIDYKGTIL 213

Query: 266 AVEHDLIVLDYLSDYIHIM---YGIP-----SAY-------------------------- 291
            V HD   LD ++ +I  +    GIP     SA+                          
Sbjct: 214 CVTHDRYFLDDITSWILELDRGKGIPYEGNYSAWLEQKAKRLEQEAREDKSKQKTLEREL 273

Query: 292 -----GVVTHPRGTRVGINTYLDGFLKEENIRFRKSPIVFEKRPPQDSTNRPLLLDYTDI 346
                G       ++  IN Y D   + E  +  ++ IV    P   S     +++   I
Sbjct: 274 EWMRQGAKARQAKSKARINAYNDLASQSEREKLTRAQIVIPNGPRLGSK----VIEVEGI 329

Query: 347 SKKLGDFSLNVNG--GQIYQGEVVGILGPNGIGKTTFVKALAGVISPDSGEVT-GD-VKV 402
           SK  GD  L V G    +  G +VG++GPNG GK+T  + L G   PD G V+ GD VK+
Sbjct: 330 SKHYGDKQL-VEGLSFDLPPGGIVGVIGPNGAGKSTLFRMLTGQEQPDEGNVSYGDTVKL 388

Query: 403 SYKPQ---------YISSDFEGTVEDLLMSITAIHTSYYKSEI-------IKPLALENIL 446
           SY  Q          +     G  E + +    +++  Y S          K L+L    
Sbjct: 389 SYVDQSRDDLNDNETVWEAISGGAEIIELGDAQVNSRAYCSSFNFKGGDQQKKLSL---- 444

Query: 447 DSSVKDLSGGELQRVSIAACLSQDADLYLIDEPSAFLDVEQRLTTSRVIRRMADEKEAAM 506
                 LSGGE  RV +A  L +  ++ L+DEP+  LDVE    T R +     +     
Sbjct: 445 ------LSGGERNRVHMARLLKEGGNVLLLDEPTNDLDVE----TLRALEDALVDFAGCA 494

Query: 507 FVVDHDILFQDYISDRFIVFSGIA 530
            V+ HD  F D I    + F G A
Sbjct: 495 VVISHDRFFLDRICTHILAFEGDA 518



 Score = 56.2 bits (134), Expect = 3e-12
 Identities = 52/197 (26%), Positives = 87/197 (44%), Gaps = 45/197 (22%)

Query: 365 GEVVGILGPNGIGKTTFVKALAGVISPDSGE--VTGDVKVSYKPQYISSDFEGTVEDLLM 422
           G  +G++G NG GK+T +K +AG+ +  +GE       KV Y PQ    D   TV + +M
Sbjct: 34  GVKIGVVGVNGAGKSTLMKIMAGLDTDFTGEAWAAEGAKVGYLPQEPKLDESLTVRENVM 93

Query: 423 --------------SITAIHTSYYKSEIIKPL-ALENIL--------------------- 446
                          I       Y  E+++ + AL++ +                     
Sbjct: 94  LGVKAKKDKVDRFNQIAVEMAENYTDELMEEMTALQDSIDAENLWDLDSQIDISMEALRC 153

Query: 447 ---DSSVKDLSGGELQRVSIAACLSQDADLYLIDEPSAFLDVEQRLTTSRVIRRMADEKE 503
              D+ + +LSGGE +RV++   L +  ++ L+DEP+  LD E   T + + + + D K 
Sbjct: 154 PPDDAEIANLSGGERRRVALCKLLLEAPEMLLLDEPTNHLDAE---TIAWLQQHLIDYK- 209

Query: 504 AAMFVVDHDILFQDYIS 520
             +  V HD  F D I+
Sbjct: 210 GTILCVTHDRYFLDDIT 226



 Score = 48.5 bits (114), Expect = 7e-10
 Identities = 45/186 (24%), Positives = 81/186 (43%), Gaps = 22/186 (11%)

Query: 97  PRDGVTGLLGPNGVGKSTIIKALSGEMVLNLNDLTETPDMKKVLDYFSGTELQNYFEKLK 156
           P  G+ G++GPNG GKST+ + L+G+         E PD   V   +  T   +Y ++ +
Sbjct: 347 PPGGIVGVIGPNGAGKSTLFRMLTGQ---------EQPDEGNV--SYGDTVKLSYVDQSR 395

Query: 157 NNGIKPIHKPQYVDVLPKVVKGKVGELLKKVDEKGEFEKIINALEI-SNILDRTFDQLSG 215
           ++           + + + + G   E+++  D +       ++         +    LSG
Sbjct: 396 DD-------LNDNETVWEAISGG-AEIIELGDAQVNSRAYCSSFNFKGGDQQKKLSLLSG 447

Query: 216 GELQRVAIAAACLREGDIYYFDEPTSWLDVKQRFSAAKVIREVAEGKKVVAVEHDLIVLD 275
           GE  RV +A      G++   DEPT+ LDV+   +    + + A     V + HD   LD
Sbjct: 448 GERNRVHMARLLKEGGNVLLLDEPTNDLDVETLRALEDALVDFA--GCAVVISHDRFFLD 505

Query: 276 YLSDYI 281
            +  +I
Sbjct: 506 RICTHI 511