Pairwise Alignments

Query, 590 a.a., ribosome biogenesis/translation initiation ATPase RLI from Methanococcus maripaludis S2

Subject, 639 a.a., ABC transporter ATPase component (RefSeq) from Shewanella loihica PV-4

 Score =  104 bits (260), Expect = 1e-26
 Identities = 132/515 (25%), Positives = 216/515 (41%), Gaps = 113/515 (21%)

Query: 104 LLGPNGVGKSTIIKALSGEMVLNLNDLTETPDMK--------------KVLDYFSGTELQ 149
           ++G NG GKS+++K + GE++L+  +     D+K               V  Y S   LQ
Sbjct: 34  IVGRNGAGKSSLMKVIGGEVLLDDGEFNIANDVKVSRLQQDPPKAEQGTVYAYISAG-LQ 92

Query: 150 NYFEKLKNNGIKPIHKPQYVDVLPKVVKGKVGELLKKVDEKGEFEKIINALEISNILDRT 209
              EKL+    +  H   +VD        ++  LLK+++        +N  ++   +++T
Sbjct: 93  EVGEKLERYH-QLSHDVAHVDAQ------EMERLLKQMERLQSDLDHLNGWQLDTRINQT 145

Query: 210 FD-----------QLSGGELQRVAIAAACLREGDIYYFDEPTSWLDVKQRFSAAKVIREV 258
            +            LSGG  ++VA+A A + E D+   DEPT+ LD+       + + E 
Sbjct: 146 CELLGLDADASLASLSGGWQRKVALARALVSEPDLLLLDEPTNHLDI----DTIEWLEEF 201

Query: 259 AEGKK--VVAVEHDLIVLDYLSDYIHIMYGIPSAYGVVTHPRGTRVGINTYLDGFLK--- 313
               +  +V + HD   +  ++  I     +    GVVT   G      TYLDG  +   
Sbjct: 202 LLNYRGAIVFISHDRGFIQRMATRI-----VDLDRGVVTSWPGD---YQTYLDGKAEWLR 253

Query: 314 ---EENIRFRKSPIVFE------------------------KRPPQDSTNRP-------- 338
              E+N +F K     E                        +    +  NR         
Sbjct: 254 VEEEKNAQFDKKLAEEEAWIRQGIKARRTRNEGRVRALKALRMERMERINRQGGAKMAVA 313

Query: 339 -------LLLDYTDISKKLGDFSLNVN-GGQIYQGEVVGILGPNGIGKTTFVKALAGVIS 390
                  L+ D  D++  L D +L  N    + +G+ + ++GPNG GK+T +K L G ++
Sbjct: 314 DTERSGKLVFDIKDLNYNLPDKNLVKNFTTSVMRGDRIALIGPNGCGKSTLIKLLIGQLA 373

Query: 391 PDSGEVTGDVK--VSYKPQYISS-DFEGTVEDLLMSITAIHT---------SYYKSEIIK 438
           P SGEV    K  V+Y  QY  + D E TVED +       T         SY +  +  
Sbjct: 374 PQSGEVKVGTKLEVAYFDQYREALDPEKTVEDNVGEGKKTVTINGQDRHILSYLQDFLFS 433

Query: 439 PLALENILDSSVKDLSGGELQRVSIAACLSQDADLYLIDEPSAFLDVEQRLTTSRVIRRM 498
           P+       + VK LSGGE  R+ +A  L + A+L ++DEP+  LD+E    T  ++  +
Sbjct: 434 PMRAR----TPVKALSGGEKNRLLLARLLLRPANLIILDEPTNDLDIE----TLELLESL 485

Query: 499 ADEKEAAMFVVDHDILFQDYISDRFIVFSGIAGSS 533
             + +  + +V HD  F D        F+G  G S
Sbjct: 486 LTDYQGTLLLVSHDRAFIDNTVTSSWWFTGNGGWS 520



 Score = 52.4 bits (124), Expect = 6e-11
 Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 47/206 (22%)

Query: 362 IYQGEVVGILGPNGIGKTTFVKALAGVISPDSGE--VTGDVKVSYKPQ------------ 407
           I  GE V I+G NG GK++ +K + G +  D GE  +  DVKVS   Q            
Sbjct: 26  IEPGERVCIVGRNGAGKSSLMKVIGGEVLLDDGEFNIANDVKVSRLQQDPPKAEQGTVYA 85

Query: 408 YISSDFEGTVEDL----LMSITAIHTSYYKSE-IIKPLA-----LENI------------ 445
           YIS+  +   E L     +S    H    + E ++K +      L+++            
Sbjct: 86  YISAGLQEVGEKLERYHQLSHDVAHVDAQEMERLLKQMERLQSDLDHLNGWQLDTRINQT 145

Query: 446 -------LDSSVKDLSGGELQRVSIAACLSQDADLYLIDEPSAFLDVEQRLTTSRVIRRM 498
                   D+S+  LSGG  ++V++A  L  + DL L+DEP+  LD++    T   +   
Sbjct: 146 CELLGLDADASLASLSGGWQRKVALARALVSEPDLLLLDEPTNHLDID----TIEWLEEF 201

Query: 499 ADEKEAAMFVVDHDILFQDYISDRFI 524
                 A+  + HD  F   ++ R +
Sbjct: 202 LLNYRGAIVFISHDRGFIQRMATRIV 227