Pairwise Alignments

Query, 590 a.a., ribosome biogenesis/translation initiation ATPase RLI from Methanococcus maripaludis S2

Subject, 560 a.a., ABC transporter, ATP-binding protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  104 bits (260), Expect = 8e-27
 Identities = 136/500 (27%), Positives = 216/500 (43%), Gaps = 91/500 (18%)

Query: 103 GLLGPNGVGKSTIIKALSGEMVLNLNDLT------------------ETPDMKKVLD--Y 142
           G+LG NG GKS+++K L+G +  N +  T                  ET  +++V++   
Sbjct: 39  GVLGLNGSGKSSLLKILAG-VDQNFDGKTVLAPGFTIGYLEQEPLVDETRTVREVVEEGV 97

Query: 143 FSGTELQNYFEKLKNNGIKPIHKPQYVDVLPKVVKGKVGELLKKVDEKGEF------EKI 196
               +L   FE++      P+ +P  +D L +    + G++ +++D KG +      E  
Sbjct: 98  QDIVDLVKEFEEINARFADPM-EPDEMDALIE----RQGKVQEQMDAKGAWDLDARLEMA 152

Query: 197 INALEISNILDRTFDQLSGGELQRVAIAAACLREGDIYYFDEPTSWLDVKQRFSAAKVIR 256
           ++AL      D     +SGGE +RVA+    L+  DI   DEPT+ LD +      + ++
Sbjct: 153 MDALRCP-AGDTPVSVISGGERRRVALCRLLLQNPDILLLDEPTNHLDAESVAWLERFLQ 211

Query: 257 EVAEGKKVVAVEHDLIVLDYLSDYIHIM---YGIP--SAYGVVTHPRGTRVGINTYLDG- 310
                  V+AV HD   LD ++ +I  +    GIP    Y      +  R+      +  
Sbjct: 212 GFPG--TVIAVTHDRYFLDNVAGWILELDRGRGIPWKGNYSSWLEQKEKRLANEDKAEAE 269

Query: 311 ---FLKEENIRFRKSPI-------------------VFEKRPPQDSTNRP-------LLL 341
               LK E    R SP                      EKR P      P        ++
Sbjct: 270 RQKTLKRELEWIRMSPKGRHAKGKARINAYEAMLSHESEKRAPDLEIYIPPGPRLGKKVI 329

Query: 342 DYTDISKKLGDFSLNVNGGQ--IYQGEVVGILGPNGIGKTTFVKALAGVISPDSGEVT-G 398
           +   +SK +GD  L + G +  I  G +VGI+GPNG GKTT  K +AG+  PD+G +T G
Sbjct: 330 EAQGVSKSMGDKML-IEGLECIIPAGAIVGIVGPNGAGKTTLFKIIAGLEQPDAGTLTVG 388

Query: 399 D-VKVSYKPQYISSDFEG-TVEDLL--------MSITAIHTSYYKSEIIKPLALENILDS 448
           D VK++Y  Q   S   G TV +L+        +    ++   Y S       +      
Sbjct: 389 DTVKLAYVDQNRESLTPGKTVYELISDGYDTVKLGTREVNARAYCSRF---NFMGQDQQK 445

Query: 449 SVKDLSGGELQRVSIAACLSQDADLYLIDEPSAFLDVEQRLTTSRVIRRMADEKEAAMFV 508
            V  LSGGE  R+ +A  L + A++ L+DEP+  LDV     T R +    +     + V
Sbjct: 446 KVDVLSGGERNRLHVARMLKEGANVILLDEPTNDLDV----NTMRALEDGIENFAGVVLV 501

Query: 509 VDHDILFQDYISDRFIVFSG 528
           + HD  F D ++   + F G
Sbjct: 502 ISHDRWFLDRLATHILAFEG 521



 Score = 45.8 bits (107), Expect = 5e-09
 Identities = 47/205 (22%), Positives = 81/205 (39%), Gaps = 53/205 (25%)

Query: 363 YQGEVVGILGPNGIGKTTFVKALAGVISPDSGE--VTGDVKVSYKPQYISSDFEGTVE-- 418
           + G  +G+LG NG GK++ +K LAGV     G+  +     + Y  Q    D   TV   
Sbjct: 33  FYGAKIGVLGLNGSGKSSLLKILAGVDQNFDGKTVLAPGFTIGYLEQEPLVDETRTVREV 92

Query: 419 ---------DLLMSITAIHTSYYKSEIIKPLALENIL----------------------- 446
                    DL+     I+  +  ++ ++P  ++ ++                       
Sbjct: 93  VEEGVQDIVDLVKEFEEINARF--ADPMEPDEMDALIERQGKVQEQMDAKGAWDLDARLE 150

Query: 447 -----------DSSVKDLSGGELQRVSIAACLSQDADLYLIDEPSAFLDVEQRLTTSRVI 495
                      D+ V  +SGGE +RV++   L Q+ D+ L+DEP+  LD E      R +
Sbjct: 151 MAMDALRCPAGDTPVSVISGGERRRVALCRLLLQNPDILLLDEPTNHLDAESVAWLERFL 210

Query: 496 RRMADEKEAAMFVVDHDILFQDYIS 520
           +         +  V HD  F D ++
Sbjct: 211 QGF----PGTVIAVTHDRYFLDNVA 231



 Score = 45.1 bits (105), Expect = 8e-09
 Identities = 46/187 (24%), Positives = 74/187 (39%), Gaps = 20/187 (10%)

Query: 95  ITPRDGVTGLLGPNGVGKSTIIKALSGEMVLNLNDLTETPDMKKVLDYFSGTELQNYFEK 154
           I P   + G++GPNG GK+T+ K ++G    +   LT    +K  L Y      QN    
Sbjct: 350 IIPAGAIVGIVGPNGAGKTTLFKIIAGLEQPDAGTLTVGDTVK--LAYVD----QNRESL 403

Query: 155 LKNNGIKPIHKPQYVDVLPKVVKGKVGELLKKVDEKGEFEKIINALEISNILDRTFDQLS 214
                +  +    Y  V     +        + +  G+ ++            +  D LS
Sbjct: 404 TPGKTVYELISDGYDTVKLGTREVNARAYCSRFNFMGQDQQ------------KKVDVLS 451

Query: 215 GGELQRVAIAAACLREGDIYYFDEPTSWLDVKQRFSAAKVIREVAEGKKVVAVEHDLIVL 274
           GGE  R+ +A       ++   DEPT+ LDV    +    I   A    V+ + HD   L
Sbjct: 452 GGERNRLHVARMLKEGANVILLDEPTNDLDVNTMRALEDGIENFA--GVVLVISHDRWFL 509

Query: 275 DYLSDYI 281
           D L+ +I
Sbjct: 510 DRLATHI 516