Pairwise Alignments

Query, 590 a.a., ribosome biogenesis/translation initiation ATPase RLI from Methanococcus maripaludis S2

Subject, 255 a.a., ABC transporter ATP-binding protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 85.9 bits (211), Expect = 2e-21
 Identities = 68/244 (27%), Positives = 114/244 (46%), Gaps = 23/244 (9%)

Query: 339 LLLDYTDISKKLGDFSLNVNGG-QIYQGEVVGILGPNGIGKTTFVKALAGVISPDSGEVT 397
           ++L   D+ KK G  ++  +    + QGE+VG+LGPNG GKTT      G+I+P+ G + 
Sbjct: 6   MVLRTEDLVKKYGKRTVVSHVSIDVKQGEIVGLLGPNGAGKTTSFYMTVGLITPNEGRIF 65

Query: 398 GD--------------VKVSYKPQYISSDFEGTVEDLLMSI---TAIHTSYYKSE---II 437
            D                + Y  Q  S   + +VED + S+   T     Y K +   +I
Sbjct: 66  LDDLEITKFPVYKRAQTGIGYLAQEASVFRQMSVEDNIASVLEMTNKPKDYQKDKLESLI 125

Query: 438 KPLALENILDSSVKDLSGGELQRVSIAACLSQDADLYLIDEPSAFLDVEQRLTTSRVIRR 497
               L+ +  +    LSGGE +R  IA CL+ D    ++DEP A +D        +++ +
Sbjct: 126 AEFRLQKVRKNKGNQLSGGERRRTEIARCLAIDPKFIMLDEPFAGVDPIAVEDIQQIVWK 185

Query: 498 MADEKEAAMFVVDHDILFQDYISDR-FIVFSGIAGSSGTGSEPLQKRAGANKFLKEMGIT 556
           + D K   + + DH++     I+DR +++F G     GT  E  + +    K+L    + 
Sbjct: 186 LKD-KNIGILITDHNVQETLSITDRAYLLFEGKILFQGTPEELAENKIVREKYLSNSFVL 244

Query: 557 FRRD 560
            R+D
Sbjct: 245 RRKD 248



 Score = 43.1 bits (100), Expect = 1e-08
 Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 21/178 (11%)

Query: 75  LTDDRIVHSYGQNRFRLYGLITPRDG-VTGLLGPNGVGKSTIIKALSGEMVLNLNDLTET 133
           L  + +V  YG+     +  I  + G + GLLGPNG GK+T      G +         T
Sbjct: 8   LRTEDLVKKYGKRTVVSHVSIDVKQGEIVGLLGPNGAGKTTSFYMTVGLI---------T 58

Query: 134 PDMKKV-LDYFSGTELQNYFEKLKNNGIKPIHKPQYVDVLPKV-VKGKVGELLKKVD--- 188
           P+  ++ LD    T+   Y  K    GI   +  Q   V  ++ V+  +  +L+  +   
Sbjct: 59  PNEGRIFLDDLEITKFPVY--KRAQTGIG--YLAQEASVFRQMSVEDNIASVLEMTNKPK 114

Query: 189 --EKGEFEKIINALEISNILDRTFDQLSGGELQRVAIAAACLREGDIYYFDEPTSWLD 244
             +K + E +I    +  +     +QLSGGE +R  IA     +      DEP + +D
Sbjct: 115 DYQKDKLESLIAEFRLQKVRKNKGNQLSGGERRRTEIARCLAIDPKFIMLDEPFAGVD 172