Pairwise Alignments
Query, 590 a.a., ribosome biogenesis/translation initiation ATPase RLI from Methanococcus maripaludis S2
Subject, 622 a.a., ABC transporter ATP-binding protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482
Score = 112 bits (281), Expect = 3e-29
Identities = 140/550 (25%), Positives = 233/550 (42%), Gaps = 81/550 (14%)
Query: 103 GLLGPNGVGKSTIIKALSGEMVLNLNDLTETPDMKKVLDYFSGTELQNYFEKLKNNGIKP 162
GL+ NG GK+T++ ++G+ + ++ D++ +DY + Y E+L
Sbjct: 35 GLIAKNGSGKTTLLNIIAGKEGYDSGNIVFRRDLR--VDYLE--QDPQYPEELTVLEACF 90
Query: 163 IHKPQYVDVLPKV-----VKGKVG--ELLKKVDEKGEFE------KIINALEISNILDRT 209
H V+++ + +G G +LL ++D++ +E +I++ L+I N D+
Sbjct: 91 HHGNSTVELIKEYERCMETEGHPGLEDLLARMDQEKAWEYEQKAKQILSQLKIRNF-DQR 149
Query: 210 FDQLSGGELQRVAIAAACLREGDIYYFDEPTSWLDVKQRFSAAKVIREVAEGKKVVAVEH 269
QLSGG+L+RVA+A A + E D+ DEPT+ LD+ +R ++ V H
Sbjct: 150 VKQLSGGQLKRVALANALITEPDLLILDEPTNHLDLDMTEWLEDYLRRT--NLSLLMVTH 207
Query: 270 DLIVLDYL-SDYIHI----MYGIPSAYGVVTHPRGTRVGIN------------TYLDGFL 312
D LD + S+ I I +Y Y R R+ T LD
Sbjct: 208 DRYFLDRVCSEIIEIDNQQIYQYKGNYSYYLEKRQERIEAKSVEIERANNLYRTELDWMR 267
Query: 313 KEENIRFRKSPI----------VFEKRPPQDSTNRPLLLDYTD--------ISKKLGDFS 354
+ R K+ V ++R D+ + Y + K GD
Sbjct: 268 RMPQARGHKARYREDAFYELEKVAKQRFNNDNVKLEVKASYIGSKIFEADHLFKSYGDLK 327
Query: 355 LNVNGGQIY-QGEVVGILGPNGIGKTTFVKALAGVISPDSGEVTGDVKVS---YKPQYIS 410
+ + I+ + E +GI+G NG GK+TF+K L G + PDSG V V Y +
Sbjct: 328 ILDDFSYIFARYEKMGIVGNNGTGKSTFIKILMGQVKPDSGTVDVGETVRFGYYSQDGLQ 387
Query: 411 SDFEGTVEDLLMSITAIHTSYYKSEIIKPLALENIL------DSSVKDLSGGELQRVSIA 464
D + V D++ I + + L++ L S V LSGGE +R+ +
Sbjct: 388 FDEQMKVIDVVQDIAEVIELGNGKRLTASQFLQHFLFTPETQHSYVYKLSGGERRRLYLC 447
Query: 465 ACLSQDADLYLIDEPSAFLDVEQRLTTSRVIRRMADEKEAAMFVVDHDILFQDYISDRFI 524
L ++ + ++DEP+ LD+ T V+ + + VV HD F D + D +
Sbjct: 448 TVLMRNPNFLVLDEPTNDLDI----ITLNVLEEYLQNFKGCVIVVSHDRYFMDKVVDHLM 503
Query: 525 VFSG---IAGSSGTGSEPLQKRAGANKFLKEMGITFRRDPDTGRPRVN-------KEGSQ 574
VF+G I G S+ + K KE ++ T R R+N KE +
Sbjct: 504 VFNGQGDIRDFPGNYSDYRDWKEA--KAQKEKEAEKPQEEKTARVRLNDKRKMSFKEKRE 561
Query: 575 RDVYQKEIGE 584
+ +KEI E
Sbjct: 562 FEQLEKEIAE 571
Score = 74.3 bits (181), Expect = 1e-17
Identities = 69/242 (28%), Positives = 108/242 (44%), Gaps = 45/242 (18%)
Query: 341 LDYTDISKKLGDFSL--NVNGGQIYQGEVVGILGPNGIGKTTFVKALAGVISPDSGEVT- 397
L +++K GD L N++ G I +G+ VG++ NG GKTT + +AG DSG +
Sbjct: 6 LQVDNLTKSFGDLVLFENISFG-IAEGQRVGLIAKNGSGKTTLLNIIAGKEGYDSGNIVF 64
Query: 398 -GDVKVSY---KPQY---------------------------ISSDFEGTVEDLLMSITA 426
D++V Y PQY + ++ +EDLL +
Sbjct: 65 RRDLRVDYLEQDPQYPEELTVLEACFHHGNSTVELIKEYERCMETEGHPGLEDLLARMDQ 124
Query: 427 IHTSYYK---SEIIKPLALENILDSSVKDLSGGELQRVSIAACLSQDADLYLIDEPSAFL 483
Y+ +I+ L + N D VK LSGG+L+RV++A L + DL ++DEP+ L
Sbjct: 125 EKAWEYEQKAKQILSQLKIRN-FDQRVKQLSGGQLKRVALANALITEPDLLILDEPTNHL 183
Query: 484 DVEQRLTTSRVIRRMADEKEAAMFVVDHDILFQDYISDRFIVFSG--IAGSSGTGSEPLQ 541
D++ +RR ++ +V HD F D + I I G S L+
Sbjct: 184 DLDMTEWLEDYLRR----TNLSLLMVTHDRYFLDRVCSEIIEIDNQQIYQYKGNYSYYLE 239
Query: 542 KR 543
KR
Sbjct: 240 KR 241
Score = 49.7 bits (117), Expect = 4e-10
Identities = 52/218 (23%), Positives = 97/218 (44%), Gaps = 36/218 (16%)
Query: 78 DRIVHSYGQNRFRL-YGLITPRDGVTGLLGPNGVGKSTIIKALSGEMVLNLNDLTETPDM 136
D + SYG + + I R G++G NG GKST IK L G++ + + T D+
Sbjct: 317 DHLFKSYGDLKILDDFSYIFARYEKMGIVGNNGTGKSTFIKILMGQVKPD----SGTVDV 372
Query: 137 KKVLDYFSGTELQNYFEKLKNNGIKPIHKPQYVDVLPKVVKGKVGELLKKVDEKGEFEKI 196
+ + + Y+ + +G++ + + +DV+ + +V E G +++
Sbjct: 373 GETVRF-------GYYSQ---DGLQFDEQMKVIDVVQDIA---------EVIELGNGKRL 413
Query: 197 INALEISNILDRTFDQ------LSGGELQRVAIAAACLREGDIYYFDEPTSWLDVKQRFS 250
+ + + L Q LSGGE +R+ + +R + DEPT+ LD+
Sbjct: 414 TASQFLQHFLFTPETQHSYVYKLSGGERRRLYLCTVLMRNPNFLVLDEPTNDLDI----I 469
Query: 251 AAKVIREVAEGKK--VVAVEHDLIVLDYLSDYIHIMYG 286
V+ E + K V+ V HD +D + D++ + G
Sbjct: 470 TLNVLEEYLQNFKGCVIVVSHDRYFMDKVVDHLMVFNG 507