Pairwise Alignments

Query, 209 a.a., trimeric intracellular cation channel family protein from Methanococcus maripaludis S2

Subject, 203 a.a., putative transporter, required for glycine utilization (from data) from Pseudomonas fluorescens FW300-N2E2

 Score = 93.2 bits (230), Expect = 3e-24
 Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 4/200 (2%)

Query: 6   IFFIMNIIGLLAFAVVGALKGIKKGLDLLGIIVLGIMTALGGGITRDLLVNTIPYA-LRS 64
           +  ++ +I + A A+ GAL   ++G+D  G++++  +TALGGG  RD+L+   P   ++ 
Sbjct: 1   MLLMLYLIAITAEAMTGALSAGRRGMDWFGVVLIACVTALGGGSVRDVLLGHYPLTWVKH 60

Query: 65  PNDMGVALIGVWCAIVIFKVFNEDVSNKYIIQIPDAVGLSAFTTTGAMIAYNFDVSFFGI 124
           P  + +        + + +      S   +  + DA GL AFT  G M A          
Sbjct: 61  PEYLVLTTAAAMLTVFLARWMRHLRS---LFLVLDAAGLVAFTLIGCMTALEMGHGMLVA 117

Query: 125 IILATLTGVGGGIISDILLQKTPSALTEDFYASCSIIGAIAFYLAILSNLSLEMSAVICS 184
            +   +TGV GGI+ DI     P     + YAS S   A  + L +   L  E + +I  
Sbjct: 118 SVSGVITGVFGGILRDIFCNDIPLIFRRELYASVSFAAAWCYLLCVFLQLPSEQAILITL 177

Query: 185 IVVLMIRIVAILCKWSLPKF 204
               ++R++AI   W +PKF
Sbjct: 178 FGGFLLRLLAIRFHWEMPKF 197



 Score = 53.1 bits (126), Expect = 3e-12
 Identities = 23/76 (30%), Positives = 42/76 (55%)

Query: 5   NIFFIMNIIGLLAFAVVGALKGIKKGLDLLGIIVLGIMTALGGGITRDLLVNTIPYALRS 64
           ++F +++  GL+AF ++G +  ++ G  +L   V G++T + GGI RD+  N IP   R 
Sbjct: 86  SLFLVLDAAGLVAFTLIGCMTALEMGHGMLVASVSGVITGVFGGILRDIFCNDIPLIFRR 145

Query: 65  PNDMGVALIGVWCAIV 80
                V+    WC ++
Sbjct: 146 ELYASVSFAAAWCYLL 161