Pairwise Alignments

Query, 209 a.a., trimeric intracellular cation channel family protein from Methanococcus maripaludis S2

Subject, 217 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score = 89.0 bits (219), Expect = 6e-23
 Identities = 59/193 (30%), Positives = 95/193 (49%), Gaps = 2/193 (1%)

Query: 12  IIGLLAFAVVGALKGIKKGLDLLGIIVLGIMTALGGGITRDLLVNTIPYALRSPNDMGVA 71
           +IG+LA A+ GAL   +K +DL G++++G  TA+GGG  RD+L+   P          +A
Sbjct: 12  LIGILAEAMTGALCAGRKQMDLFGVVIIGCATAIGGGTLRDILLGNYPLIWVENIHYLLA 71

Query: 72  LIGVWCAIVIFKVFNEDVSNKYIIQIPDAVGLSAFTTTGAMIAYNFDVSFFGIIILATLT 131
           +       VI       +S  ++    DA+GL+ F+  GA        S    I++  +T
Sbjct: 72  IAFASLLTVIISPVMRYLSKLFL--AIDALGLAVFSIVGAQKTLLLGFSPTLAIVMGVVT 129

Query: 132 GVGGGIISDILLQKTPSALTEDFYASCSIIGAIAFYLAILSNLSLEMSAVICSIVVLMIR 191
           GV GG+I DIL  + P    ++ YA  S+  A  + L     ++  ++  I   V    R
Sbjct: 130 GVFGGVIRDILCNQVPLIFKKELYALVSLTTASLYMLLRSFEVTEWINLAISLSVGFSFR 189

Query: 192 IVAILCKWSLPKF 204
           ++AI   W +PKF
Sbjct: 190 MLAIRYHWGMPKF 202



 Score = 46.2 bits (108), Expect = 4e-10
 Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 3/99 (3%)

Query: 6   IFFIMNIIGLLAFAVVGALKGIKKGLDLLGIIVLGIMTALGGGITRDLLVNTIPYALRSP 65
           +F  ++ +GL  F++VGA K +  G      IV+G++T + GG+ RD+L N +P   +  
Sbjct: 92  LFLAIDALGLAVFSIVGAQKTLLLGFSPTLAIVMGVVTGVFGGVIRDILCNQVPLIFKKE 151

Query: 66  NDMGVALIGVWCAIVIFKVFNEDVSNKYIIQIPDAVGLS 104
                AL+ +  A +   + + +V+    + I  +VG S
Sbjct: 152 L---YALVSLTTASLYMLLRSFEVTEWINLAISLSVGFS 187