Pairwise Alignments

Query, 209 a.a., trimeric intracellular cation channel family protein from Methanococcus maripaludis S2

Subject, 206 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  117 bits (294), Expect = 1e-31
 Identities = 72/198 (36%), Positives = 109/198 (55%), Gaps = 3/198 (1%)

Query: 8   FIMNIIGLLAFAVVGALKGIKKGLDLLGIIVLGIMTALGGGITRDLLVNTIP-YALRSPN 66
           +  ++ G   FA+ GAL   +  +D  G+IVL  +TA+GGG  RD L+ T P + +R PN
Sbjct: 6   YFFDLCGTAVFALSGALAAGRHRMDPFGVIVLASVTAIGGGSIRDALLGTTPVFWIRDPN 65

Query: 67  DMGVALIGVWCAIVIFKVFNEDVSNKYIIQIPDAVGLSAFTTTGAMIAYNFDVSFFGIII 126
            + V L  V  A++  +        +Y + + DA GL+ FT  GA  A N  +S    ++
Sbjct: 66  YIIVILATVLLALLFIR--KPKKVPQYTLPVADAFGLALFTVIGAEKALNLGLSGMIAVV 123

Query: 127 LATLTGVGGGIISDILLQKTPSALTEDFYASCSIIGAIAFYLAILSNLSLEMSAVICSIV 186
           +  +TGVGGGII DIL ++ P  L  + YA+ SI G I++  AI   L+ +++  I  I 
Sbjct: 124 MGLITGVGGGIIRDILCRQIPMILRTEIYATASIFGGISYTCAITWGLADKVALAIAMIS 183

Query: 187 VLMIRIVAILCKWSLPKF 204
            L+IR+ AI     LP F
Sbjct: 184 ALVIRLAAIKWHLRLPAF 201