Pairwise Alignments

Query, 209 a.a., trimeric intracellular cation channel family protein from Methanococcus maripaludis S2

Subject, 208 a.a., putative transporter, required for glycine utilization (from data) from Shewanella oneidensis MR-1

 Score =  114 bits (286), Expect = 1e-30
 Identities = 66/198 (33%), Positives = 109/198 (55%), Gaps = 3/198 (1%)

Query: 8   FIMNIIGLLAFAVVGALKGIKKGLDLLGIIVLGIMTALGGGITRDLLVNTIP-YALRSPN 66
           +  ++ G   FA+ GAL   +  +D  G+IVL  +TA+GGG  RD L+   P + +R PN
Sbjct: 6   YFFDLCGTAVFALSGALAAGRHRMDPFGVIVLASVTAVGGGSIRDALIGATPVFWIRDPN 65

Query: 67  DMGVALIGVWCAIVIFKVFNEDVSNKYIIQIPDAVGLSAFTTTGAMIAYNFDVSFFGIII 126
            + V L  V   +++ +        +Y++ + DA+GL+ FT  GA  A N  +S    ++
Sbjct: 66  YIIVILATVVACLLLVR--RPRKMPEYVLPVADALGLALFTVIGAEKALNMGLSGMIAVV 123

Query: 127 LATLTGVGGGIISDILLQKTPSALTEDFYASCSIIGAIAFYLAILSNLSLEMSAVICSIV 186
           +  +TGVGGGII D+L ++ P  L  + YA+ SIIG I + +++   +  + +  +    
Sbjct: 124 MGLITGVGGGIIRDLLCRQIPMVLRTEIYATASIIGGIGYTVSLACGMGEKTALFLAMAS 183

Query: 187 VLMIRIVAILCKWSLPKF 204
            L+IR+ AI    SLP F
Sbjct: 184 ALIIRLCAIKWHLSLPAF 201



 Score = 53.9 bits (128), Expect = 2e-12
 Identities = 27/71 (38%), Positives = 42/71 (59%)

Query: 4   ENIFFIMNIIGLLAFAVVGALKGIKKGLDLLGIIVLGIMTALGGGITRDLLVNTIPYALR 63
           E +  + + +GL  F V+GA K +  GL  +  +V+G++T +GGGI RDLL   IP  LR
Sbjct: 89  EYVLPVADALGLALFTVIGAEKALNMGLSGMIAVVMGLITGVGGGIIRDLLCRQIPMVLR 148

Query: 64  SPNDMGVALIG 74
           +      ++IG
Sbjct: 149 TEIYATASIIG 159